Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00025 ATGAACTCTCTCAAAACAGGGGACCCTATCTTGCACGGCATTGATCTCAAGAGCGGAAACACCATCAACGCTTGGATCGATTACAAGTCCGATCGAACGGTTCTCGACGTTTTCTTGAGTTACTCTCGCTCTAAGCCCTTGGATCCTATCCTCACTGTTCGTGTTGATCTTTCTGAGCACTTCAACGACGTCGTTTACGTTGGGTTCTCTGCTTCCACTGAAGGAAGTACAGAGCTTCATCAAATTCAAAGTTGGAGCTTTCACACCATTGGGTTGAAGTTGAAGAAGCCTCACAATGTTTCTGACAATTCCGTGAGTGTGACAGTGGGTGTTCATGCTTCAGGTTCAGCCAAGAACCATGGCAAGAGGGTTGGGATTGGTTTTGCTGTTGCAGGGTTTGTGAAATGGAAAGGTGTGAGAAAAGGGAAAGGTTTCAAGGGTTTTACTACTACTGCTACTGGGTTTGTTGTGTGTCCTAGGGAGTTTGATTACAAAGAGTTGAAATCTGCTACCAGAGAGTTTCATCCAAGTAGGATCGTTGGTCATGGATCTTTTGGGACTGTGTATAAAGCTTTCTTTATATCTTCAGGAACAATTGCTGCTGTGAAAAGGTCTAGACATTCCCATGAAGGAAAGACAGAATTTTTGGCTGAATTGAACATTATAGCTGGTTTAAGGCACAAGAATTTGGTGCAGCTTCAAGGTTGGTGTGTTGAGAAGGGAGAGTTGTTGCTTGTGTATGATTTCATGCCTAATGGAAGCTTGGACAAGATGCTTTACAAGGATCCTGAAAGGGGGAAATTGTTGAATTGGTCTCATAGGGTTAATATTGCTCTTGGGTTGGCTTCTGTGTTGGTTTATCTTCATCAAGAGTGTGAGCAGAGGGTGATTCATAGGGATATTAAGACTGGGAATATATTGCTGGATGGGAATTTTAATCCTAGGTTGGGGGATTTTGGATTGGCAAAACTAATGGATCATGATAAGAGCCCTGTTTCAACATTGACTGCTGGAACTATGGGGTACCTTGCACCTGAGTATCTTCAATATGGGAAGGCTAATGATAAGACAGATGTTTTTAGCTATGGGGTGGTTGTGCTTGAGGTGGCTTGTGGGAAGAGGCCAATTGAAAGGGAAGGGTCAAAGATGGTAAATTTGGTTGATTGGGTTTGGGGGTTGCACTCTGAAGGGAAGATTATTGAGGCAGCAGATAAAAGGTTGAATGGGGAATTTGAGGAGGAGGAAATGAGGAAGCTTTTGCTATTGGGGTTGTGTTGTGCTAACCCTGATAGTGCTGAGAGGCCTTCCATGAGAAGGGTCATGCAGATACTCAACAATGAAGCTGGGCCAATTGTTGTGGCAAAAGTGAAGCCATGCCTCACATTCTCATCTGATTTGCCCCTCACTATTGATGAGATTGTTAAGGAGGCTGAAGAAGAATCCAATATCAGCCAGTCTATGTGTGAGATAAAAATCGGCTGA 1482 0.4366 MNSLKTGDPILHGIDLKSGNTINAWIDYKSDRTVLDVFLSYSRSKPLDPILTVRVDLSEHFNDVVYVGFSASTEGSTELHQIQSWSFHTIGLKLKKPHNVSDNSVSVTVGVHASGSAKNHGKRVGIGFAVAGFVKWKGVRKGKGFKGFTTTATGFVVCPREFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLAELNIIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKMLYKDPERGKLLNWSHRVNIALGLASVLVYLHQECEQRVIHRDIKTGNILLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKANDKTDVFSYGVVVLEVACGKRPIEREGSKMVNLVDWVWGLHSEGKIIEAADKRLNGEFEEEEMRKLLLLGLCCANPDSAERPSMRRVMQILNNEAGPIVVAKVKPCLTFSSDLPLTIDEIVKEAEEESNISQSMCEIKIG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00025 493 SMART serkin_6 174 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi199g00025 493 SUPERFAMILY Concanavalin A-like lectins/glucanases 12 236 IPR013320 -
Sebi199g00025 493 Gene3D Transferase(Phosphotransferase) domain 1 250 455 - -
Sebi199g00025 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Sebi199g00025 493 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524
Sebi199g00025 493 FunFam L-type lectin-domain containing receptor kinase VIII.1 250 462 - -
Sebi199g00025 493 Pfam Protein kinase domain 175 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi199g00025 493 Gene3D - 1 129 - -
Sebi199g00025 493 Gene3D Phosphorylase Kinase; domain 1 146 249 - -
Sebi199g00025 493 CDD STKc_IRAK 180 446 - -
Sebi199g00025 493 ProSiteProfiles Protein kinase domain profile. 174 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi199g00025 493 SUPERFAMILY Protein kinase-like (PK-like) 157 463 IPR011009 -
Sebi199g00025 493 Pfam Legume lectin domain 2 91 IPR001220 GO:0030246
Sebi199g00025 493 PANTHER - 13 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00025 Sebi-Chr199 242567 244087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00025 1 483 Receptor kinase-like Gene Family AT5G55830 60.819 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi199g00025 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi199g00025 - - gmx:102668712 744.962