Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00106 ATGACTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCGAAGGCTGCTTTTTTCAAATGGCTTCCCTGATGGACTATTTTCTTCAAATAGAAAGCTTCTTCAGACAACACCAAAAGTTGATATTGTGGTGGCCCAAGATGATACTGTGAATTATAAGACCATATCAAAAGGTGTGGCTGCAACTGCTAAGCTAAGTGGAAAATGGAGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGTGTTGA 258 0.3876 MTLASSSTTTKQVGGRRLLFSNGFPDGLFSSNRKLLQTTPKVDIVVAQDDTVNYKTISKGVAATAKLSGKWRVVIHVKAGVYKEC 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00106 85 SUPERFAMILY Pectin lyase-like 38 84 IPR011050 -
Sebi198g00106 85 Gene3D - 6 85 IPR012334 -
Sebi198g00106 85 Pfam Pectinesterase 43 84 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00106 Sebi-Chr198 1440220 1440477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00106 16 84 Carbohydrate Esterase AT1G23200 50.000 2.61e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00106 - K01051 gmx:100816802 110.153