Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00101 ATGTCGCTGCAAGCTCTTGTTAGAAGACGTTCAAGTGGCGAAATAAGGAACTTGACCACAGTTTCCAGCAGCCTCTTACCAGCATTTGGCACTACCACTGATGAACGTTACTTGAATCTAAAAAATATGTCATCGCTCCCTATGATCGCAGATATCGTGGCATTGGTGGTGTACTCAGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAAATGTCTATTGGGCCACTGTTGATTGCTGATCTCGTTGTAGATGTCTTCTTTGCTGTTGATATAGTCCTAACTTTTTTTGTGGCTTACTTGGATAAATCAACTTATTTCCTCGTTGATAACCATAAGAAGATTGCTATCAGGTATGTCAAAAAGTTACACTTTGCCATGGATGTGGCCTCCACTATGCCGTTTCAGCAGATATACCAAATTATAACAGGCAAACCACACAGAAACGAGTTCTTTGCTTTCCTAAATTTGCTTAGACTCTGGCGATTGAGGCGTGTTAGCCAACTCTTCTCAAGGATAGAGAAAGACACACGAATTAGCTACTCGGTAGCAAGGTTTTCTAAACTTATATGCGTTACGCTATTTGCAGTGCACTCTGCAGGCTGCATGTATTTTTGGTTGGCTGTTCATCACAAGACACCCGGAAACACATGGATCGGGAAACAAGTAGAGGATTTTAAACATAGGAGCATCTCGTTGGGTTACACTTATTCCATGTACTGGTCTATTGTAACCCTTACTACTGTTGGCTATGGAGATTTACATGCAGAAAATACTACGGAGAAGGCTTTCAATATTTTATATATGCTGTTTAACATCGGCCTCACTGCATATATAATCGGAAACATGACAAATCTTGTGGTTCATAGCTCTATCCGAACCATTGCCATGAGGGATGCCTTCAACAAAATGTTACAATATGCAAGCAAAAGTAGACTCCCAGAAGGTTTGAAGGAGCAAATGTTAGCACACTTACAGTTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTAAAGGGCCTGCCTAAAGCAATTAGATCCAGTATTGCTCAACATCTTTTCCACAACATAGTTGCAAATGCATATTTATTTAACGGAGTCTCTGATGATTTTGTCACCCAGCTGGTGTCAGAAATGAAAGCAGAATACTACCCATCTAAGGTTGACATCGTCCTGCAAAATGAGGTGCCAGCATATTTCTACATTTTAGTCTCTGGATCAGTGTTATTGTTCAAACTAGAACCTGGAGACATGGTTGGAGAAATAGGCGTGATGTTGAATATTCCACAACCTTATACAGTGAGAAGTAGAAGGCTATCCCAGGTCATACGAATCAGTCATCAACATTTCAAGGAAATGGTACAGCCATTTACTGACGATGGGAAGACAATCATCAGCAACTTTATTCAGTTTTTGAAGGGCCTAAATGGCGAGGTGCTAGAAGAAATACCGTGTGTAACAGAATTGTTGGGTGACCTGCATGATGAGCATCTAACACAAAATGAGGGCACACACGATAATGTTTCAGGTTATCATGAAGATGATCCATATGAAGAAGGAAGAGCAGAAAATACCAATCCAGTGTCAAGCCTAGTCCCCGTTAGAGTCAAAATCTACGGACATCATCCAAATGAAAACAAAATGGGAAACGGAGCAACACCGAAGCTCATACTACTCCCAAATTCAGTAGAAGATCTTTTCAAAGTCGCAGGACTCTTTATTTGA 1731 0.4096 MSLQALVRRRSSGEIRNLTTVSSSLLPAFGTTTDERYLNLKNMSSLPMIADIVALVVYSAWASPFELAFREMSIGPLLIADLVVDVFFAVDIVLTFFVAYLDKSTYFLVDNHKKIAIRYVKKLHFAMDVASTMPFQQIYQIITGKPHRNEFFAFLNLLRLWRLRRVSQLFSRIEKDTRISYSVARFSKLICVTLFAVHSAGCMYFWLAVHHKTPGNTWIGKQVEDFKHRSISLGYTYSMYWSIVTLTTVGYGDLHAENTTEKAFNILYMLFNIGLTAYIIGNMTNLVVHSSIRTIAMRDAFNKMLQYASKSRLPEGLKEQMLAHLQLKFKTAELQQEEVLKGLPKAIRSSIAQHLFHNIVANAYLFNGVSDDFVTQLVSEMKAEYYPSKVDIVLQNEVPAYFYILVSGSVLLFKLEPGDMVGEIGVMLNIPQPYTVRSRRLSQVIRISHQHFKEMVQPFTDDGKTIISNFIQFLKGLNGEVLEEIPCVTELLGDLHDEHLTQNEGTHDNVSGYHEDDPYEEGRAENTNPVSSLVPVRVKIYGHHPNENKMGNGATPKLILLPNSVEDLFKVAGLFI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00101 576 MobiDBLite consensus disorder prediction 501 523 - -
Sebi198g00101 576 Pfam Cyclic nucleotide-binding domain 386 457 IPR000595 -
Sebi198g00101 576 CDD CAP_ED 365 467 IPR000595 -
Sebi198g00101 576 SUPERFAMILY cAMP-binding domain-like 294 473 IPR018490 -
Sebi198g00101 576 PANTHER POTASSIUM CHANNEL AKT1 52 486 IPR045319 GO:0005249|GO:0006813
Sebi198g00101 576 FunFam Potassium channel KAT2 353 478 - -
Sebi198g00101 576 Pfam Ion transport protein 52 286 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi198g00101 576 ProSiteProfiles cAMP/cGMP binding motif profile. 365 473 IPR000595 -
Sebi198g00101 576 PRINTS EAG/ELK/ERG potassium channel family signature 279 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00101 576 PRINTS EAG/ELK/ERG potassium channel family signature 235 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00101 576 PRINTS EAG/ELK/ERG potassium channel family signature 261 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00101 576 PRINTS EAG/ELK/ERG potassium channel family signature 81 91 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00101 576 PRINTS EAG/ELK/ERG potassium channel family signature 92 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00101 576 Gene3D - 46 289 - -
Sebi198g00101 576 Gene3D Jelly Rolls 329 476 IPR014710 -
Sebi198g00101 576 FunFam Potassium channel KAT3 50 289 - -
Sebi198g00101 576 SMART cnmp_10 365 471 IPR000595 -
Sebi198g00101 576 SUPERFAMILY Voltage-gated potassium channels 52 287 - -
Sebi198g00101 576 MobiDBLite consensus disorder prediction 501 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00101 Sebi-Chr198 1359168 1366012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00101 8 572 Ion Channels AT4G32650 56.397 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00101 K21867 - gmx:100794620 804.668