Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00091 ATGGCTGCTGGTTATGATCTTATTAAGAGTCTGTATCCTGGGAGACAGAATTGGAGGCTGAAGGTTAGGGTTGTCCGTGTGTGGGATATGTCGCCCGTTGATCAGCCATCACAACCATTTGCTATTGAGATGGTTCTTATTGACTCGGAGGGCAACCGGATTCAAGCATCAATAAGGAAGCCGATGATAAGGCGGTTCAGAGGTGTCGTTGAAGAGGGACAAATTTATCGAATGTCGTACTTTGGCATAGTGAAAAACACGGGATCATTCAGGGCTGCCCATCATGAGTATAAACTGCTTTTTCATGGAAGAACTCGTGTGATACCTTGCGAGGGACTGTCAATGCCGTTGCATGGCCTGTCCTTGATGAAAACCGATGCAATTTACCAAACGGATGGGCAATCTGAATATTTAGTTGACATGATAGGATTGCTGACTGCTGTGTCGACCGAGAAGTTGTCCGTGAGGGATGGTCGGACCACGAGGCATATTGTTATGGAACTCACTGATGATAAGGGTAAGATTCAGTGTACTATGTTTGGCCACTATGTTGACCTGATCAAGGAAAGTCTGGATAGTTCTGGTGAGCAGATTCCAGTGGTGATTGCCCAATTTGTTCGAGTGAAGAAGTACAAGGGCTGTGTTGTCCTGCAGAATGTGATGAATACATCAAGGGTGATTTGGAGTCCTCAGATTCCAGAGGCGGTTGAGTTTAAGGATCGCATGATTGCATGTGGGTTCGATGAGACTGACACCATTGGGGTGGTGGACGACTCTCACAAGGAGGTGTCCCTCAATGACGACTTCCTGGCGATGTTCCCGCGAAAGACTATCAGTGAGCTGCACTCAACTGAAGAGGAGGGTAGCTTCGTTGTGCTTGCGACGATTGCTGCTGTGTTGATTGATGACACCTGGTGGTATAAAGCATGCAAATGCATGAAAGCTGTAGGCGATGCAGATGGGAAGCCGTTTTGTCAGTCGTGCTGCATGACTGTGGACAATATTACTCCGAGATATAAGCTGAGGGTAGAGACTTTTGATGGGGGTGATACTGCTGCTTTTATCTTATTTGACTCCGATTCAAGGTTCTTGCTTGGGAAACCATGTTCACACTTTGTGTCACCCAGTGAGGATCCAAAGTTCAGTGAGTACCCAGAAGAATTTAACGAATTGGTTGGTCTGGAGCTGTTGTTTAAGGTTGAAAAGCTATCTGATTATGCATTTTCTTTTGATGATTCGTTTAAAGTGAAGAGGGTGTGCGACGACGTTGCCATTATTGAAAAGTTTAAGGAAGGTGGCCTTGCACGGACTCCGGAGTTGGCTAAGTTTGTGCCCCTATTTCCAACGATGGATTCGTCGTCCTCCGATCTTAATTGTGCGAGGAATGTGAATGAAATCGTTGATCTCGCTGCTGATGCATCTGAGGCGACTGTATGCCTTGATGACAAAGGTTGTGGTTCAGTTCAAACAAGGACTGGGCAAAAGGTGTTGACTGAGGAAGCTAGCGGTGGCAAGAAGCGAGGTGGCAAGCTTCGCAAGATTAAGCTGGAGGATGCATAA 1560 0.4654 MAAGYDLIKSLYPGRQNWRLKVRVVRVWDMSPVDQPSQPFAIEMVLIDSEGNRIQASIRKPMIRRFRGVVEEGQIYRMSYFGIVKNTGSFRAAHHEYKLLFHGRTRVIPCEGLSMPLHGLSLMKTDAIYQTDGQSEYLVDMIGLLTAVSTEKLSVRDGRTTRHIVMELTDDKGKIQCTMFGHYVDLIKESLDSSGEQIPVVIAQFVRVKKYKGCVVLQNVMNTSRVIWSPQIPEAVEFKDRMIACGFDETDTIGVVDDSHKEVSLNDDFLAMFPRKTISELHSTEEEGSFVVLATIAAVLIDDTWWYKACKCMKAVGDADGKPFCQSCCMTVDNITPRYKLRVETFDGGDTAAFILFDSDSRFLLGKPCSHFVSPSEDPKFSEYPEEFNELVGLELLFKVEKLSDYAFSFDDSFKVKRVCDDVAIIEKFKEGGLARTPELAKFVPLFPTMDSSSSDLNCARNVNEIVDLAADASEATVCLDDKGCGSVQTRTGQKVLTEEASGGKKRGGKLRKIKLEDA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00091 519 Gene3D - 270 429 IPR012340 -
Sebi198g00091 519 Pfam Replication factor-A C terminal domain 292 420 IPR013955 -
Sebi198g00091 519 SUPERFAMILY Nucleic acid-binding proteins 273 419 IPR012340 -
Sebi198g00091 519 SUPERFAMILY Nucleic acid-binding proteins 121 242 IPR012340 -
Sebi198g00091 519 Pfam Domain of unknown function DUF223 43 130 IPR003871 -
Sebi198g00091 519 CDD RPA1_DBD_A_like 19 107 - -
Sebi198g00091 519 PANTHER OS03G0429900 PROTEIN 5 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi198g00091 519 CDD RPA1_DBD_C 276 400 IPR047192 -
Sebi198g00091 519 CDD RPA1_DBD_B_like 140 243 - -
Sebi198g00091 519 Gene3D - 114 252 IPR012340 -
Sebi198g00091 519 SUPERFAMILY Nucleic acid-binding proteins 4 115 IPR012340 -
Sebi198g00091 519 Gene3D - 7 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00091 Sebi-Chr198 1275310 1277853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00091 10 400 Core DNA Replication Machinery Family AT5G08020 24.146 2.68e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00091 - - lja:Lj6g3v0884310.1 414.075