Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00075 ATGGCTCGCCCCACTCATCATGTCATTGATATAACGCCGAGTACTTCTGAACCTTCCACTTCTACCTATAACAATAATGGTAGATTGCCGGTTTCTCAGCCTTCAAATTCTTCTTCTAGGATGAGAAGAGGGAATTCATCACGTGGGCAAAGGAGTTCATTGAATTCAGGGGTATGGATATCTATTGAGCTTCTCCTTACACTTAGTCAGATTGTTGCTTCTGTGCTTGTTTTGTCTCTATCAAGGCATGAGCATCCGCGTACACCATTGTTTGCTTGGATTGTTGGTTATGCATCTGGATGTGTTGCTTCCCTCCCTTTACTCTATTGGCGATATTATCATAATAACCGTGCACGAGACCAGGATTCATCTCAAACCTCTCCTCGAATTGATGATCCTTCAGGGATACTTCTTAACAGTTCCATGACAAATGGAGGAGGAGGAGATGTTAATTCTTCTTCTGCTGCTGCTGCATCGGCATCCTCTACAAGCCATCAAGCTTCATGGTTGATGAATGCAAGGCTGAAACTACTCGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTCGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTAATGAAGCTCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGTTGTATCGGTTATGCTATGCCCTTCATTTTATGTGCAACAATCTGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGGATTAGAGAGGATCCAATACAAACTCAAGGTGCAACCTCTGAAACCATTAATGCTCTACCAACTTACAAGTTCAAAATGAAGAAAAATAAAAGCAAGGATGAAAGCAACTCAGCTGTCAGTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTAGCGAAATATGAAAATAACGATGAGCTGAGGGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTGGACAAGTGGTTGAAGATAAATGCCTTATGCCCCCTTTGCAAGAGTGAGATTGGTGAGAACGTAACAGGATCAGTCTCTGGGGAGGATGCGAACCAACAACAGGGTGAGAACAGGGTTGAAAATGGCCTCTCCAATACCTCATCATAA 1167 0.4225 MARPTHHVIDITPSTSEPSTSTYNNNGRLPVSQPSNSSSRMRRGNSSRGQRSSLNSGVWISIELLLTLSQIVASVLVLSLSRHEHPRTPLFAWIVGYASGCVASLPLLYWRYYHNNRARDQDSSQTSPRIDDPSGILLNSSMTNGGGGDVNSSSAAAASASSTSHQASWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSANEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGIREDPIQTQGATSETINALPTYKFKMKKNKSKDESNSAVSEGGIVAAGTEKERMISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEIGENVTGSVSGEDANQQQGENRVENGLSNTSS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00075 388 SMART ring_2 313 353 IPR001841 -
Sebi198g00075 388 MobiDBLite consensus disorder prediction 1 53 - -
Sebi198g00075 388 MobiDBLite consensus disorder prediction 364 388 - -
Sebi198g00075 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 362 IPR013083 -
Sebi198g00075 388 MobiDBLite consensus disorder prediction 9 53 - -
Sebi198g00075 388 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 5 357 - -
Sebi198g00075 388 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Sebi198g00075 388 Pfam Ring finger domain 313 354 IPR001841 -
Sebi198g00075 388 FunFam E3 ubiquitin-protein ligase 296 362 - -
Sebi198g00075 388 SUPERFAMILY RING/U-box 305 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00075 Sebi-Chr198 1124080 1127157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00075 32 364 C3H Transcription Factor Family AT1G80400 54.925 2.85e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00075 - - gmx:100775815 574.704