Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00060 ATGTGGTTGGATGTTTACATCCATGATTACCTAGTAAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTCATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGGTTGGTTGGGATAACTTTTCATTGCTTTCACATTCTGCTGCCTTCTTTCATGCTAAATTTGACGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCCCTAGCCACAAAGATGTATGAGGAGAGGTTAAAACTTCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTTTTGGACCCTAATCATGCCTCAATATTGAAGTCAGCTGCAGCTACCGGCCAGCCATCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGCACTCAGCAAATTCCAGGGTCTACAATGGATATAAAGAGTGAGATAAATCCCGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGCAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACCCTGAAAGGGTGGCCGCTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTCCAGCAGCAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCAACAACTTCAAATGTTGACACCGCAGCATCAACAACAGCTTATGCTTGCACAACAAAATTTGGCATCACCATCTGCTAGTGAAGAAAGTCGAAGACTAAGAATGCTTTTGAATAATAGGAGTTTGGGCCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCGAATGTTGGATCACCTCTTCAAGGAGGTGGCCCTCCTTTTCCTCGTGGAGATACTGATATGCTGATGAAGACTTCAAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGCGTCAACATGGATGGTAGTATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAACCTGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACGACAGGCCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGACGTGATATCAATGCCTGCCTTGCCTCATAGTGGTACTTCTTCAAAGCCTCTAATGATGTTCGGCTCTGACGGCACCGGAACTCTTACGTCATCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGGCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAACTCTGTACGGGCAAGCACAAGCAAAATTGCCTGTTGCCATTTCTCCTCTGATGGAAAATTACTTGCTAGTGGTGGCCATGACAAAAAGGTTGTTCTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATCACTGATGTCCGTTTCAGTCCAAGCATGCCACGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCACTTCGGACCTTTACGGGACATTCTACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGCGACGGTGATGGCGAGATACGGTATTGGGGCATAAACAATGGCAGCTGTACTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAGCCTCGTCTAGGGAGATATCTTGCTGCAGCTGCAGAGAACATTGTGTCTATACTTGATGTGGAGACGCAGGCATGCCGGTATTCATTAAAGGGGCACACAAAGACAATAGATTCTGTATGCTGGGATCCATCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGAATCTTGGAACAGGGAATGAAGGAGAATGTATTCATGAGCTTAGCTGTAATGGCAGTCTAATTACTGCATTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCAAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2250 0.448 MWLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEVGWDNFSLLSHSAAFFHAKFDANGLVGNPGTANALATKMYEERLKLPLQRDSLDEAAMKQRFGENMGQLLDPNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARTQQIPGSTMDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFQQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRSLGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKTSNHSMHQQDKVGGGGGSVNMDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGTSSKPLMMFGSDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKIACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWGINNGSCTRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRVWNLGTGNEGECIHELSCNGSLITALAVSTVNGLVASASHDKFIKLWK 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00060 749 Pfam LisH 3 27 IPR006594 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 583 IPR001680 GO:0005515
Sebi198g00060 749 PRINTS G protein beta WD-40 repeat signature 736 749 IPR020472 -
Sebi198g00060 749 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Sebi198g00060 749 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Sebi198g00060 749 Gene3D - 471 642 IPR015943 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 713 IPR001680 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 717 749 - -
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 583 - -
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 537 - -
Sebi198g00060 749 MobiDBLite consensus disorder prediction 352 412 - -
Sebi198g00060 749 SMART WD40_4 499 538 IPR001680 GO:0005515
Sebi198g00060 749 SMART WD40_4 584 624 IPR001680 GO:0005515
Sebi198g00060 749 SMART WD40_4 710 749 IPR001680 GO:0005515
Sebi198g00060 749 SMART WD40_4 666 704 IPR001680 GO:0005515
Sebi198g00060 749 SMART WD40_4 541 580 IPR001680 GO:0005515
Sebi198g00060 749 ProSiteProfiles LIS1 homology (LisH) motif profile. 3 31 IPR006594 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 717 749 IPR001680 GO:0005515
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Sebi198g00060 749 MobiDBLite consensus disorder prediction 310 430 - -
Sebi198g00060 749 PANTHER TRANSCRIPTION ACTIVATOR MSS11 333 722 - -
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 629 - -
Sebi198g00060 749 CDD WD40 510 749 - -
Sebi198g00060 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 705 - -
Sebi198g00060 749 SUPERFAMILY WD40 repeat-like 504 748 IPR036322 GO:0005515
Sebi198g00060 749 Gene3D - 643 749 IPR015943 GO:0005515
Sebi198g00060 749 ProSitePatterns Trp-Asp (WD) repeats signature. 567 581 IPR019775 -
Sebi198g00060 749 Pfam WD domain, G-beta repeat 545 580 IPR001680 GO:0005515
Sebi198g00060 749 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Sebi198g00060 749 Pfam WD domain, G-beta repeat 508 537 IPR001680 GO:0005515
Sebi198g00060 749 Pfam WD domain, G-beta repeat 587 623 IPR001680 GO:0005515
Sebi198g00060 749 Pfam WD domain, G-beta repeat 711 749 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00060 Sebi-Chr198 968961 978648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00060 543 748 Miscellaneous Gene Families AT5G08390 26.047 2.30e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sebi198g00060 WD40 0.0034 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00060 - - gmx:100816263 1149.42