Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00049 ATGGCAAAGAAGAAGATGTTCAAAAGGCTATGTGCCAGCCCTGACGAGGCCACAGCAAATGATGAGGAAGATAGAGATCACATAGAGAATATTGAACAAATGTCTATGGACGATTATGGAAGCCAATACAGCCTCACCGGCATTCCTCTTCCTCCTCTTGGTGCCACCGCTGCCACCACCACCCGGAGACCCAAGCTCCGAAGTTGGATTATTTCCCCATGTAACCCTCGTTACAGAATGTGGGATAAATTTCTGTTGCTTTTAGTTTTCTACACGGCATGGGTGAGCCCGTTTGAATTTGGATTCCTGAATGAACCAGTGGATCCTATTTCTGTTGCGGACAATTTTGTCAACTTTTTCTTTGCATTGGACATTTTCTTGACTTTCTTTGTTGCGTACCATGACAAGACTACACATTTGCTTGTGGATGAACCAAAACTCATTGCTGTGAGATATATCAAAACATGGTTGGTAGTTGATGTCATCGCCACCTTCCCTTCTGAAGTTGCTCACAAAGTGTTGCCTGGTCCTCTTAAGACATATGGCTACTTCAGTATGCTGCGCCTTTGGCGTCTCCGTAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGATAGAAATTATAACTATTTCTGGGTGCGCTGCTTAAAGCTTATATGTGTTACCCTGTTTACTGTGCATTTTGCTGCTTGCTTTTTCTTCTTTCTCACTGTCAATCATGACGCGAAATCAACATGGCTTGGACTTATTTCTGATGCCACTGATAAGAGTCTCACCGGTAACTACATAACATCAGTATATTGGTCTATAATGACTCTTTCAACAGTTGGTTATGGTGATCTGCATCCTGTGGACACAAGGGAGATGGTATTTGATATAATATTTATGCTCTTCAATTTGGGACTAACATCATATCTTATTGGAAACATGACAAATTTAGTTGTTCACGGAACAAGCAGAACTAGAAGATATAGAGACACAGTGCAAGCTGCTGCAGGATTTGCTAACAGGAATCAGTTACCTATCCGCTTACAAGAACAAATGTTTTCTCATTTGTTTATGAAGTATAGAACTGATCTAGAAGGACTGCAGCAACAAGAGATCATTGATTCCCTTCCTAAAGCTATTCGATCTAGTGTCTCACACTACCTATTCTATTCATTTGTGGACAAATTATACTTGTTTCAGGGAGTGTCACATGACCTACTCTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTCCCCCAAAGGAAGATGTGATTTTGGAGAATGAAGCGCCAACAGACTTTTATATCTTTGTCACTGGTTCCGCAGAACTTATTATACGAAAGAATGGAATAGAACATGTAGTTGGTGAGGCAAAGGCAGGAGATGTTGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGCTGTTTACAGTTCGAACCAAACGATTGAGCCAACTTCTGCGCTTGAATCGTACTACATTTCTAAATCTTGTTCATTCAAATGTTGGAGATGGGACAATAATCATGAACAATTTTCTCCACCATTTGCAAGAATCAAGGCATCCAGGGATGGATGTTATTTTGGCAGAAACAGAGACCATGCTGGCTAGGGGTAGAATGGATTTGCCCATTAGCACATGCTTTGCAGCAGACAGAAATGATGACCTATTGTTACATCGGTTGCTTAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAGGACAGCATTGCATATTGCAGCTTCTAATGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATACGGTGCTGATCCAAATAGCAAAGATTCGGATGGAAATTTCCCACTATGGGAAGCAATGATGGGTAGGCATAAATCTATCATGAAACTTCTTGTAGACAATAGTGCAGACATATCCTCTTTCAATGCAGGCCATCTAGCATGCACTGCTGTTGAGCAAAATGACTTAGAATTGCTCAAGGAAATTGTTCAACTTGGTGTGGATGTGACACAACCCAAAATGAATGAAACCACTGCCCTCCATGCTGCAGTATGTGAAGGAAATGGAGAGCTGGTAAAGTTCCTTCTAGACCAAGGAGCAGACATTGATAGGCCAGATGTTAATGGCTGGACTCCAAGGGCTTTGGCAGAACATCAAGGCCATGAAGAAATTAAAGATATATTCCAGAAAAGTGGAGACTGCAGAAAAGCACCAGTTATTATTCCAATACCAACATCAAAGGATGCTAAGGTGTCAAAGTTCCAAAGTGAACCCACTATGCCTGCTACTGCTAGTCTTTCCCAAGAAAGCATTCCAGAGCCACCTAATCAAGAGTTAACTTGGCTAGATAATCATAGAAGAAGAAGGGCCAGCAATTTTCATAATTCCATTTTTGGAATGATCTCAGCTGCCAATCGTGATAATAAAGTTCGCAAGGAAGCTGAAAGCAGTAACACTAATAGGAGGAACGTGAATGGATTAGTAGGCAGAGTGACACTGAGTTGTCCTGAAAGAGATGCACATGCTGGAAAGCTTGTTTTGCTGCCCAATTCTCTTCAAGAACTGTTAGATATTGGTGCCAAAAAGTTTGATTTCTCTCCCACCAAAATTTTGACTAGTGAAGGAGCTGAAGTTGACGATATAAATCTTATAAGAGATGGTGATCATCTTATTATTGCAAGTGACTGA 2670 0.4105 MAKKKMFKRLCASPDEATANDEEDRDHIENIEQMSMDDYGSQYSLTGIPLPPLGATAATTTRRPKLRSWIISPCNPRYRMWDKFLLLLVFYTAWVSPFEFGFLNEPVDPISVADNFVNFFFALDIFLTFFVAYHDKTTHLLVDEPKLIAVRYIKTWLVVDVIATFPSEVAHKVLPGPLKTYGYFSMLRLWRLRRVSAMFARLEKDRNYNYFWVRCLKLICVTLFTVHFAACFFFFLTVNHDAKSTWLGLISDATDKSLTGNYITSVYWSIMTLSTVGYGDLHPVDTREMVFDIIFMLFNLGLTSYLIGNMTNLVVHGTSRTRRYRDTVQAAAGFANRNQLPIRLQEQMFSHLFMKYRTDLEGLQQQEIIDSLPKAIRSSVSHYLFYSFVDKLYLFQGVSHDLLFQLVTEMKAEYFPPKEDVILENEAPTDFYIFVTGSAELIIRKNGIEHVVGEAKAGDVVGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNLVHSNVGDGTIIMNNFLHHLQESRHPGMDVILAETETMLARGRMDLPISTCFAADRNDDLLLHRLLKKGSDPNEVDKNGRTALHIAASNGNEHCVTLLLEYGADPNSKDSDGNFPLWEAMMGRHKSIMKLLVDNSADISSFNAGHLACTAVEQNDLELLKEIVQLGVDVTQPKMNETTALHAAVCEGNGELVKFLLDQGADIDRPDVNGWTPRALAEHQGHEEIKDIFQKSGDCRKAPVIIPIPTSKDAKVSKFQSEPTMPATASLSQESIPEPPNQELTWLDNHRRRRASNFHNSIFGMISAANRDNKVRKEAESSNTNRRNVNGLVGRVTLSCPERDAHAGKLVLLPNSLQELLDIGAKKFDFSPTKILTSEGAEVDDINLIRDGDHLIIASD 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00049 889 Pfam KHA, dimerisation domain of potassium ion channel 824 886 IPR021789 -
Sebi198g00049 889 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Sebi198g00049 889 SUPERFAMILY cAMP-binding domain-like 319 514 IPR018490 -
Sebi198g00049 889 SUPERFAMILY Voltage-gated potassium channels 73 315 - -
Sebi198g00049 889 ProSiteProfiles Ankyrin repeat region circular profile. 669 700 - -
Sebi198g00049 889 Pfam Ankyrin repeats (3 copies) 644 721 IPR002110 GO:0005515
Sebi198g00049 889 Pfam Ankyrin repeats (3 copies) 546 634 IPR002110 GO:0005515
Sebi198g00049 889 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Sebi198g00049 889 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Sebi198g00049 889 FunFam Potassium channel KAT3 80 316 - -
Sebi198g00049 889 MobiDBLite consensus disorder prediction 1 24 - -
Sebi198g00049 889 SUPERFAMILY Ankyrin repeat 545 724 IPR036770 -
Sebi198g00049 889 ProSiteProfiles cAMP/cGMP binding motif profile. 394 513 IPR000595 -
Sebi198g00049 889 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00049 889 PRINTS EAG/ELK/ERG potassium channel family signature 306 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00049 889 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00049 889 PRINTS EAG/ELK/ERG potassium channel family signature 288 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00049 889 PRINTS EAG/ELK/ERG potassium channel family signature 262 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi198g00049 889 Pfam Ion transport protein 79 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi198g00049 889 Gene3D Jelly Rolls 362 520 IPR014710 -
Sebi198g00049 889 PANTHER POTASSIUM CHANNEL AKT1 42 887 IPR045319 GO:0005249|GO:0006813
Sebi198g00049 889 Pfam Cyclic nucleotide-binding domain 414 499 IPR000595 -
Sebi198g00049 889 SMART cnmp_10 394 511 IPR000595 -
Sebi198g00049 889 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
Sebi198g00049 889 FunFam Potassium channel KAT2 382 518 - -
Sebi198g00049 889 CDD CAP_ED 394 499 IPR000595 -
Sebi198g00049 889 Gene3D - 80 315 - -
Sebi198g00049 889 Gene3D - 541 724 IPR036770 -
Sebi198g00049 889 MobiDBLite consensus disorder prediction 743 770 - -
Sebi198g00049 889 ProSiteProfiles KHA domain profile. 824 889 IPR021789 -
Sebi198g00049 889 MobiDBLite consensus disorder prediction 742 770 - -
Sebi198g00049 889 PRINTS Ankyrin repeat signature 573 588 IPR002110 GO:0005515
Sebi198g00049 889 PRINTS Ankyrin repeat signature 685 699 IPR002110 GO:0005515
Sebi198g00049 889 SMART ANK_2a 605 634 IPR002110 GO:0005515
Sebi198g00049 889 SMART ANK_2a 572 601 IPR002110 GO:0005515
Sebi198g00049 889 SMART ANK_2a 636 665 IPR002110 GO:0005515
Sebi198g00049 889 SMART ANK_2a 669 698 IPR002110 GO:0005515
Sebi198g00049 889 SMART ANK_2a 539 568 IPR002110 GO:0005515
Sebi198g00049 889 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00049 Sebi-Chr198 729739 734933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00049 32 889 Ion Channels AT2G25600 58.796 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00049 K21867 - gmx:100786870 1238.02