Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00042 ATGGAGGAAGACAAGTCTTCTTCATCACAACCGCTTCCAGCTAGCATTCTTGAACCATCTTTTGATGAACTCGATTCTCCGACATTTCTAATCACTCCACCACGTTTTGTTTTTTCTCCTCTAAAACAGTCACCCAAAATTGAAAGTGATATTATTGGAGCCAAGAACCCGAATCTTTGTTCAGAAGAGCCTATAGCGTATTTTGATGAAGAAGGACAAGTACAATATGTTGAATGGACTCCTCCAGAACTGAAAGAGGCCAATTCATTTGCAGACGCAGTTTTAGAGGATTCACCACCCAAGGCTATTAAAAGACGTCGTCTCCATTTTGAGGAAGCTGCATCAGATGATCTTATATTGCCACCACTTGAACAAGAGCCAGTAATAGTATCATCATCATCGGAACCTATCAGTTGCTTGATTCCTCCACAATCAGGTCCCAAGTCATCAGGCTCTGGGATATTACATTTAAATGCTCTGATACCTCTTCATTCTGAGACTACAGATAACGAATTAGCAAACGTATCTGCAGATATTAATGTCACTTCAGAGTCTCCTAGTATTATTACAGAACCTTTCACCAACTCTGAGGAATTAGCCCATGATAATAACAAGGCAATTAGCCCAACAGATGCTGGTGCAGGGAATTCTTCTGAGGAATTTAACCAACCTGGACCAGACATTTATTGTGTCTGTTTTGCTGAGGGGCTTTATTGTGCCGAGTCTTGCACCTGCGAAGGATGCTTAAATAGACCAGAATATAAAGAGGCAGTTCTTAATATGAGGGAACAAATTAGGTCCCGTAAACCATTTGCATTTGCTTCCAAGATTGTACAAGATATTCCGTCAAATAATACGGAGAATGACAATATGAAGACACCGTCATCAGCCAGGCACAGAAATGGTTGTAGATGCCCAAAATCTCGGTGTTTGCGAAATTATTGTGAATGTTTTGAGATTAAGGTTGGATGCTCCAGTGCATGTCGATGCCAGGGATGTCAGAATCCCAATGGCAGGAAACAAGGTGATCACGTTGCCATGGAAGATGCTTTTAGTAAAGAAAAGGACAAGGAGGTTGCCATGGCTATACAATCAGAATTGTATGACAATGGGGTGCCCGGCTTCTCACCTCTAACACCACCACCGTTGCGGTGCTCTAACATGAGACAATCATCAGTGCTAATTACTCCAATGAGTGGATTAAAGGAAGTCACAAGAAATCCAGAGTGTCTTGAATCGAGCTCTTCAGATGGCTTCATAAGAAAGGGTAGGAATTTTATGTGGAATAATAATAATTTGCCTTCTTTCCCACCATTAACCCCTTGCAATGATTCCAAAGCCAAAGCCAATCGTGATGGAGCAAGGAACCACAGAAAACATTATAATTGTAATATCTGA 1398 0.4127 MEEDKSSSSQPLPASILEPSFDELDSPTFLITPPRFVFSPLKQSPKIESDIIGAKNPNLCSEEPIAYFDEEGQVQYVEWTPPELKEANSFADAVLEDSPPKAIKRRRLHFEEAASDDLILPPLEQEPVIVSSSSEPISCLIPPQSGPKSSGSGILHLNALIPLHSETTDNELANVSADINVTSESPSIITEPFTNSEELAHDNNKAISPTDAGAGNSSEEFNQPGPDIYCVCFAEGLYCAESCTCEGCLNRPEYKEAVLNMREQIRSRKPFAFASKIVQDIPSNNTENDNMKTPSSARHRNGCRCPKSRCLRNYCECFEIKVGCSSACRCQGCQNPNGRKQGDHVAMEDAFSKEKDKEVAMAIQSELYDNGVPGFSPLTPPPLRCSNMRQSSVLITPMSGLKEVTRNPECLESSSSDGFIRKGRNFMWNNNNLPSFPPLTPCNDSKAKANRDGARNHRKHYNCNI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00042 465 MobiDBLite consensus disorder prediction 282 297 - -
Sebi198g00042 465 MobiDBLite consensus disorder prediction 1 20 - -
Sebi198g00042 465 ProSiteProfiles CRC domain profile. 217 338 IPR005172 -
Sebi198g00042 465 MobiDBLite consensus disorder prediction 282 302 - -
Sebi198g00042 465 MobiDBLite consensus disorder prediction 445 465 - -
Sebi198g00042 465 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 301 335 IPR005172 -
Sebi198g00042 465 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 229 251 IPR005172 -
Sebi198g00042 465 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 229 383 IPR044522 GO:0003700
Sebi198g00042 465 SMART CXC_2 229 254 IPR033467 -
Sebi198g00042 465 SMART CXC_2 298 339 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00042 Sebi-Chr198 658070 661566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00042 228 381 CPP Transcription Factor Family AT3G22760 43.871 2.94e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Sebi198g00042 TCR 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00042 K21776 - qsa:O6P43_015670 178.333