Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi198g00027 | ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTTGACTACGATGAGGAAGAAGATAAGGCCCCGGACTCCGTCGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAACCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGGCAAACTATTAAATTATCTCTATTTTTTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCATCTTTGCAGCAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTGTGTCATACAAGAGAATTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAAATGCTGGAATCGCTGGACATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCACTAGACTTCAACCAAATTGTTATCTTTGTTAAAAGCGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAATATTGTTATTAACTATGACATGCCTGATTCTGCAGACACATACTTGCATAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAGGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTCGATATAAAGCAGCTTCCAGAGCAGATTGATACCTCTACCTACATTGAGTCAATGGGCATGCCTTCGAGGATTGTCTTGTGGTTTAGTCTTTTGTAG | 1353 | 0.4257 | MGETKDEAYEEELLDYDEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLLNYLYFLQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYIESMGMPSRIVLWFSLL | 450 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi198g00027 | 450 | FunFam | DEAD-box ATP-dependent RNA helicase | 268 | 436 | - | - | |
Sebi198g00027 | 450 | Gene3D | - | 268 | 436 | IPR027417 | - | |
Sebi198g00027 | 450 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sebi198g00027 | 450 | Gene3D | - | 42 | 267 | IPR027417 | - | |
Sebi198g00027 | 450 | Pfam | DEAD/DEAH box helicase | 82 | 245 | IPR011545 | GO:0003676|GO:0005524 | |
Sebi198g00027 | 450 | Pfam | Helicase conserved C-terminal domain | 285 | 392 | IPR001650 | - | |
Sebi198g00027 | 450 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 410 | - | - | |
Sebi198g00027 | 450 | CDD | SF2_C_DEAD | 272 | 401 | - | - | |
Sebi198g00027 | 450 | SMART | ultradead3 | 74 | 275 | IPR014001 | - | |
Sebi198g00027 | 450 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 86 | 259 | IPR014001 | - | |
Sebi198g00027 | 450 | CDD | DEADc_DDX39 | 45 | 261 | - | - | |
Sebi198g00027 | 450 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sebi198g00027 | 450 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 261 | - | - | |
Sebi198g00027 | 450 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 124 | 406 | IPR027417 | - | |
Sebi198g00027 | 450 | SMART | helicmild6 | 311 | 392 | IPR001650 | - | |
Sebi198g00027 | 450 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 271 | 432 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi198g00027 | Sebi-Chr198 | 457049 | 464137 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi198g00027 | 1 | 436 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 80.544 | 0.0 | 743 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi198g00027 | K12812 | - | gmx:100808957 | 811.986 |