Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi198g00027 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTTGACTACGATGAGGAAGAAGATAAGGCCCCGGACTCCGTCGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAACCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGGCAAACTATTAAATTATCTCTATTTTTTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCATCTTTGCAGCAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTGTGTCATACAAGAGAATTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAAATGCTGGAATCGCTGGACATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCACTAGACTTCAACCAAATTGTTATCTTTGTTAAAAGCGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAATATTGTTATTAACTATGACATGCCTGATTCTGCAGACACATACTTGCATAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAGGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTCGATATAAAGCAGCTTCCAGAGCAGATTGATACCTCTACCTACATTGAGTCAATGGGCATGCCTTCGAGGATTGTCTTGTGGTTTAGTCTTTTGTAG 1353 0.4257 MGETKDEAYEEELLDYDEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLLNYLYFLQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYIESMGMPSRIVLWFSLL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi198g00027 450 FunFam DEAD-box ATP-dependent RNA helicase 268 436 - -
Sebi198g00027 450 Gene3D - 268 436 IPR027417 -
Sebi198g00027 450 MobiDBLite consensus disorder prediction 1 22 - -
Sebi198g00027 450 Gene3D - 42 267 IPR027417 -
Sebi198g00027 450 Pfam DEAD/DEAH box helicase 82 245 IPR011545 GO:0003676|GO:0005524
Sebi198g00027 450 Pfam Helicase conserved C-terminal domain 285 392 IPR001650 -
Sebi198g00027 450 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 410 - -
Sebi198g00027 450 CDD SF2_C_DEAD 272 401 - -
Sebi198g00027 450 SMART ultradead3 74 275 IPR014001 -
Sebi198g00027 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 259 IPR014001 -
Sebi198g00027 450 CDD DEADc_DDX39 45 261 - -
Sebi198g00027 450 MobiDBLite consensus disorder prediction 1 28 - -
Sebi198g00027 450 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 261 - -
Sebi198g00027 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 406 IPR027417 -
Sebi198g00027 450 SMART helicmild6 311 392 IPR001650 -
Sebi198g00027 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 432 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi198g00027 Sebi-Chr198 457049 464137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi198g00027 1 436 Eukaryotic Initiation Factors Gene Family AT5G11200 80.544 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi198g00027 K12812 - gmx:100808957 811.986