LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi197g00032	ATGTCTAGCACAGTTGGCAAGGTCATCAAGTGCAGAGCTGCTGTTTCATGGGAGGCAGGGAGGCCACTAGTGATTGAAGAAGTAGAGGTGGCACCACCCCAAGCAGGTGAAGTGCGTTTGAAGATCCTCTTCACCTCTCTTTGCCATACTGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCAGTGTTTCCTCGTATTTTTGGCCATGAAGCTGCAGGGATTGTTGAGAGCGTAGGCGAGGGTGTGACTCATCTGAAACCAGGAGACCATGCCCTCCCTGTATTCACAGGGGAGTGTGGGGAGTGCCCACACTGTAAATCAGAAGAGAGCAACTTGTGTGACCTGCTCAGGATCAACACTGATAGGGGTGTCATGATCAATGATGGCCACTCAAGGTTCTCTAAGAATGGAAAGCCCATATACCATTTCTTGGGAACCTCTACATTTAGTGAATACACTGTTCTCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGGATTTGCACAGGTCTTGGTGCTACTGTAAATGTAGCAAAACCAAAACCTGGTTCCTCTGTTGCAATTTTTGGACTTGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCTTCAAGAATCATTGGAGTTGACTTAGTTTCCAGCCGATTTGAACTAGCTAAAAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAAGATCATGACAAACCTGTACAACAGGTGATTGCTGAAATGACCAATGGAGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCAAGTAAAGATGATGCATTCAAAACTGCTCCTGTTAATTTCTTGAATGAGAGGACTCTTAAGGGTACCTTTTATGGTAATTACAAACCACGAACTGATCTTCCATCTGTTGTGGAGAAGTACATGAAAGGGGAGCTTGAAGTGGACAAATTTATTACTCACACAGTTCCATTCTCAGAGATTAACAAAGCATTTGATTACATGTTTAAAGGAGAGTCCATAAGGTGTATCATCCGCATGGAAGACTAA	1143	0.4532	MSSTVGKVIKCRAAVSWEAGRPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAAGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNLCDLLRINTDRGVMINDGHSRFSKNGKPIYHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTAPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMKGELEVDKFITHTVPFSEINKAFDYMFKGESIRCIIRMED	380

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi197g00032	380	Gene3D	-	183	321	-	-
	Sebi197g00032	380	FunFam	alcohol dehydrogenase 1-like isoform X1	19	182	-	-
	Sebi197g00032	380	CDD	alcohol_DH_plants	9	377	-	-
	Sebi197g00032	380	PANTHER	ALCOHOL DEHYDROGENASE	6	376	-	-
	Sebi197g00032	380	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	69	83	IPR002328	GO:0008270\|GO:0016491
	Sebi197g00032	380	SUPERFAMILY	GroES-like	4	187	IPR011032	-
	Sebi197g00032	380	SUPERFAMILY	GroES-like	329	377	IPR011032	-
	Sebi197g00032	380	Pfam	Zinc-binding dehydrogenase	206	330	IPR013149	-
	Sebi197g00032	380	SMART	PKS_ER_names_mod	20	376	IPR020843	GO:0016491
	Sebi197g00032	380	FunFam	Alcohol dehydrogenase class-P	183	321	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi197g00032	Sebi-Chr197	1139766	1142511	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi197g00032	37	370	Monolignol Biosynthesis Gene Families	AT1G72680	25.519	1.86e-14	72.0

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi197g00032	K18857		-	gmx:100800668	722.62

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