Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi197g00005 ATGGCTTTAGTTTCTACTACTGGGTATCACTCAATCGATAGTCTTTGTGGAAGAAGGCAAAACTGGAGATTGAAGGTCAAGCTGGTTAGGAAGTGGAACATGGCAGCTGTTGCAACTCCGGATGACCCTTATGCTCTGCAGATTCTGTTTGTGGATGAAGAGGGGGGTAGGATTGAGGGAACCATTCAAAAGCACTTAATGCTAAAATTCTCGCGTTGCTTGGTGGAAGGCCATGTTTACAAGGTTATGAATTTTGGAATTATCCGAAGTGAAGGCAAATTACGTGCTTCTCGGCATGATTATAAGATCATATTCAACTCCAACACTCAAGTTTCACCCTGCCAAGATGCCTCCATTCCATTCCTAGGGCTATCATTCAGCAAGACGTCTGATATAAAGAAGACAAAAGGTTCTTGTGACTACTTATTGGACTTCATGGGGATGGTTACGGCAGTGTCGGAGGAGATACGAGTAACAAAAGAGAGGGTTACCCGTTTGGTTTTGTTGGACTTGGTGGACGACATGTGGTTGGTGATTATCCAGTTAGCAAAGGCAAATGTGTACAAGGGACGAGTGGGTATTCAAAATGTGATGAATGCCACTAAGATATGGTGGAATCCCTTGATCTCAGAATGTATTGAGTTTAGAAATGGGGTAGCATTTCATGAGGTAGAATCGGACATGGAGATCTCATTAATATCACAAAGGCCTAGGGCTGTGTCCCTGAGGGAAGAGTTTATCAAACAATATCCAAGGAAGACCGTGGAGCAGCTGCTCCAAGTTGGGGAGGTCAGAAATTTCATCACCATGGCCATGATTACTGAGATCGTTGATGAAAAATTGTGGTGGTACACTGCTTGCCTCTGTTTGAGAGCCGTTAACTTTGATAGAGGTTACCCTTTCTGCACTCATTGCAAGCGGATCGTATTTAACATGTCTCCAAGGTTTAAGCTGAAGGTGTTGGAAAGCGATGGGGAAGATGCTGCGCACTTCATCATGTTTGATGCTGAATGCTCCCTGCTACTGAAGAAGTCTTGCCAGGAATTGCTTGATGAACAAGAGGACCCTTCATTTGATGCATACCCTGAAGAGATATTCAAGTTGGCTGGCCGAGATGTGTTGTTTCGCATTGAGGTGAAGGAACATCCTTTTAATTCCTTTGATGATAGCATCAAGGTTAGGTGGGTTTGTTTTGATTCCTCAATATTGGATGAGTTTAAGGAATGTGTGGACGATGACACTCCATGA 1248 0.4367 MALVSTTGYHSIDSLCGRRQNWRLKVKLVRKWNMAAVATPDDPYALQILFVDEEGGRIEGTIQKHLMLKFSRCLVEGHVYKVMNFGIIRSEGKLRASRHDYKIIFNSNTQVSPCQDASIPFLGLSFSKTSDIKKTKGSCDYLLDFMGMVTAVSEEIRVTKERVTRLVLLDLVDDMWLVIIQLAKANVYKGRVGIQNVMNATKIWWNPLISECIEFRNGVAFHEVESDMEISLISQRPRAVSLREEFIKQYPRKTVEQLLQVGEVRNFITMAMITEIVDEKLWWYTACLCLRAVNFDRGYPFCTHCKRIVFNMSPRFKLKVLESDGEDAAHFIMFDAECSLLLKKSCQELLDEQEDPSFDAYPEEIFKLAGRDVLFRIEVKEHPFNSFDDSIKVRWVCFDSSILDEFKECVDDDTP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi197g00005 415 CDD RPA1_DBD_C 267 385 IPR047192 -
Sebi197g00005 415 Pfam Domain of unknown function DUF223 49 116 IPR003871 -
Sebi197g00005 415 SUPERFAMILY Nucleic acid-binding proteins 8 118 IPR012340 -
Sebi197g00005 415 SUPERFAMILY Nucleic acid-binding proteins 250 408 IPR012340 -
Sebi197g00005 415 CDD RPA1_DBD_A_like 23 111 - -
Sebi197g00005 415 Gene3D - 243 409 IPR012340 -
Sebi197g00005 415 Pfam Replication factor-A C terminal domain 267 404 IPR013955 -
Sebi197g00005 415 Gene3D - 9 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi197g00005 Sebi-Chr197 115068 117311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi197g00005 10 386 Core DNA Replication Machinery Family AT5G08020 20.335 5.21e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi197g00005 - - adu:110276578 245.743