Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi196g00036 ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCACTTCCTACCGTGACCGAAGAAGTGACTCGGGGCTAGGTGCACCTGCACCTACAGGGTATGGTGGTTCAAGCAGAAGGGACCACGATGACGGTGGTTCCCCCAGGAAACTGAATTTGGATGGGTTGCCTCATTTCGAGAAAAACTTCTACACTGAATCGCCTTCCGTTAGGGCAATGACGGAGTCAGAGGTTAATGAGTATCGCCAACGGCGGGAAATCACCGTTGAAGGACGAGATGTTCCTAAACCTGTTAAGACCTTTCACGATGTTGGTTTTCCAGACTATGTGTTGCAAGAAGTTAAGAAAGCTGGCTTTGTCGAGCCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTGATAGGGATTGCAGAAACAGGATCTGGGAAGACACTTGCATACTTGTTGCCTGCCATAGTGCATGTTAATGCACAGCCAATTCTAGATCCTGGGGATGGACCAATTGTATTAGTTTTGGCCCCAACACGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCAAGGATTAAGAGCACATGCGTATATGGTGGGGTTCCAAAGGGGCCTCAAGTGCGTGATCTCCAGAAAGGCGTTGAAATTGTAATTGCTACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACTTACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTATACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTCATTATAGGTTCTGCAGATTTAAAAGCTAACCATGCTATACGGCAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGATAAATTGGTGAAATTATTGGAGGACATCATGGATGGAAGCCGAATACTGATATTCATGGATACTAAAAAAGGATGTGATCAGATTACCAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGATTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCACCGAATTGGTCGCACTGGGAGAGCTGGCGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATTACCATACTCGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGGGGTGCACCTCCTCCGCCTTCAGGAGGCTTCCGAGACCGTGGGAAGGGTTATGGCAGTGGTCGCCCGTGGAACTGA 1503 0.4677 MSRYDSRSADPTSYRDRRSDSGLGAPAPTGYGGSSRRDHDDGGSPRKLNLDGLPHFEKNFYTESPSVRAMTESEVNEYRQRREITVEGRDVPKPVKTFHDVGFPDYVLQEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCVYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSADLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGKGYGSGRPWN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi196g00036 500 Gene3D - 308 473 IPR027417 -
Sebi196g00036 500 MobiDBLite consensus disorder prediction 1 17 - -
Sebi196g00036 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 452 IPR027417 -
Sebi196g00036 500 Pfam Helicase conserved C-terminal domain 327 436 IPR001650 -
Sebi196g00036 500 CDD SF2_C_DEAD 315 445 - -
Sebi196g00036 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 474 - -
Sebi196g00036 500 FunFam probable ATP-dependent RNA helicase DDX17 58 305 - -
Sebi196g00036 500 CDD DEADc_DDX5_DDX17 107 302 - -
Sebi196g00036 500 MobiDBLite consensus disorder prediction 1 53 - -
Sebi196g00036 500 Pfam DEAD/DEAH box helicase 120 291 IPR011545 GO:0003676|GO:0005524
Sebi196g00036 500 MobiDBLite consensus disorder prediction 472 500 - -
Sebi196g00036 500 Gene3D - 59 306 IPR027417 -
Sebi196g00036 500 SMART helicmild6 355 436 IPR001650 -
Sebi196g00036 500 FunFam ATP-dependent RNA helicase RhlB 306 478 - -
Sebi196g00036 500 SMART ultradead3 115 318 IPR014001 -
Sebi196g00036 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Sebi196g00036 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 302 IPR014001 -
Sebi196g00036 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 475 IPR001650 -
Sebi196g00036 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi196g00036 Sebi-Chr196 1163325 1175041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi196g00036 83 456 Eukaryotic Initiation Factors Gene Family AT3G19760 34.400 2.18e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi196g00036 K12823 - gmx:100781619 918.687