Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi196g00033 ATGGAGGAAACACCTAAGCTTATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCATTTCCCTTCAATTGTTTATTTACAAATGGAAGGCCTGCTTATGTGACTATCAAGATAAACGACAAGAAAGTGGCTAAAACGACCCTAGAACGTGAACGTGTATGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCATCTATCACCATTACACTGAAAACTTCATGTTCCACATTGGGGAAGTTTCATATCCAGGCCAAGCAGTTGAAGGAAGAAAGTTTGATCAATGGTTTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAATTCAGAACTAAAATTAAGGTTCATATTATGGTTCAAGCCAGCATATTTGGAACCAAGTTGGGCAAAGCTACTGAGTAATGGGGAATTTCAAGGGCTGAGGGATGCTACTTTCCCACAAAGGTCCAATTGTCAGGTTAAGCTCTATCATGATGCTCATCATTCATCTGCTTTCCAACCTCCTTTTGATCTATGTGGTACTCCAAGAAAGCTTTGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTAGTTTATATTGCAGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAGAGAAATAAAGCTGGGTGAGTTATTGAAGAGGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCCTTGCCTTTTATTAAGAACAAAGGTGTTATGAACACCCATGATGAGGATGCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACAGTAAAGCACCTAACTCAGTTAATGAAAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGATGGAAGATATGATACAGAGAAACATTCATTGTTTCAAACACTAACTGAGGAATCCCATCATTATGACTTCTATCAGACAAACATTGCAGGTGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGACCCTTCTCTTTTAGTACCTGCTAACACCTTAGCAAATCTCAATCCTATTTGCTCTAGCACTCCTACAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGCAAGCCAGTTGTTTAGAAAACTAACTGTGGAGAGTAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTATATACATTGAAAACCAATATTTCATTGGGGGATGTCATTTGTGGCAGAAAGATAAGCATAGTGGTTGCAGAAATCTGATTCCCATTGAGATTGCTCTCAAGGTAGTCAATAAAATTAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTAATTGGAGAAGCAATAATAGAAAGTGGTGAGCCAGGGCATCCAAGAGACTACTTGAATTTTTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGGAGAGTATCTTCCACCACATTCTCCTCATCCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGATGACCTATACATACTAATAGGATCAGCAAATGTTAACCAAAGATCCATGGATGGGCAAAGGGACACTGAAATTGCCATAGGGGGCTACCAGTCTCAAGATGGAGCTGATCACCACCACATGAGAAAGGGAGATATTCATGCATACAGAATGTCACTATGGTATGAGCACACTGGGAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGAAGAGAATGCGCTCAATAGGAGATCAAATGTGGAAAATCTACAGTTGTGAAGAAATTATGGACATGGAAGGTGTGCACCTTGTAACATACCCTGTGAAAGTAACCCAACAAGGGTCAGTGGAGGACCAGACTGATGGTGAGGATCATTTTCCAGATACTAAATCTCTAGTGAAGGGGAAGAGATCAAAATTGTTACCCCCTATCTTTACCACTTAG 2277 0.4093 MEETPKLIHGTIEATIFNATPYSPSFPFNCLFTNGRPAYVTIKINDKKVAKTTLERERVWNQTFQIQCAHPADSSITITLKTSCSTLGKFHIQAKQLKEESLINGFFPLLMENGKPNSELKLRFILWFKPAYLEPSWAKLLSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSAFQPPFDLCGTPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKRKAEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDSKAPNSVNEREIMSFLGGLDLCDGRYDTEKHSLFQTLTEESHHYDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLANLNPICSSTPTERNWKVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADRFIYIENQYFIGGCHLWQKDKHSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKEKGEYLPPHSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGADHHHMRKGDIHAYRMSLWYEHTGSAEELFLEPESLECVKRMRSIGDQMWKIYSCEEIMDMEGVHLVTYPVKVTQQGSVEDQTDGEDHFPDTKSLVKGKRSKLLPPIFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi196g00033 758 PANTHER PHOSPHOLIPASE D 8 740 IPR015679 -
Sebi196g00033 758 SUPERFAMILY Phospholipase D/nuclease 422 687 - -
Sebi196g00033 758 Gene3D Endonuclease Chain A 175 417 - -
Sebi196g00033 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Sebi196g00033 758 SMART pld_4 295 332 IPR001736 GO:0003824
Sebi196g00033 758 SMART pld_4 602 629 IPR001736 GO:0003824
Sebi196g00033 758 SUPERFAMILY Phospholipase D/nuclease 144 430 - -
Sebi196g00033 758 Gene3D Endonuclease Chain A 418 651 - -
Sebi196g00033 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Sebi196g00033 758 Pfam Phospholipase D Active site motif 296 332 IPR001736 GO:0003824
Sebi196g00033 758 Pfam Phospholipase D Active site motif 605 629 IPR001736 GO:0003824
Sebi196g00033 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 34 126 IPR035892 -
Sebi196g00033 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 629 IPR001736 GO:0003824
Sebi196g00033 758 Pfam C2 domain 38 109 IPR000008 -
Sebi196g00033 758 PIRSF PLD_plant 6 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi196g00033 Sebi-Chr196 1087925 1090783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi196g00033 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 64.247 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi196g00033 K01115 - gmx:100807431 1422.14