Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi196g00030 ATGGACGCCAAAGCAGAACCTCCTCAAAACCCAGCCAAAAGACACAAATGCTCAGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACCTCATACCACTCTGTGCATCAGCCTAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAATTTGTTCAAAGGTTTTCTCTCAACAGGGTTGTCAACTTTGCTTGACACTATTTGCTAACCCCAGATCTCTCACTGAGCATAGAGAAACATGTCGCCTAACTGCCCCTGTTCCTCTAGGTACAAGCGCATTGCCTTATATAAGCCCTCAATTCGATTGTCGAGATTCATCTAATGAAAACCTTGCTGACAGTCGCCCTGGAGCAATTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGCTAGAGTATGCTTAATTGATGAAGATGAGAACTTAATCTTCCACACGTATGTACGGCCTCAACTCCCTGTTACTAATTATAGATATGATATAACTGGGTTGACAGAAGAGCATTTTAGAGATGCCATGCCACTTAAGAAAGTTCAAGAAAAGATATTGCAAATTTTGTACAATGGAGAATCCATTGGCAGAGCTAGATTGGACGGCGGAAAAGCCAGGTTTCTTGTGGGGCATGATTTAGCACATGATTTAGATTGCTTGAAAATGAATTATCCCGATCACATGCTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCACTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAAACTGGCACTCATGACCCATATGAAGATTGTGTTTCTGCCTTGAGACTGTACAAGAGAATACGGGGTCAAAGTCATCAGGATGAAGGCTACGGAACATTGACTCCAAGTGACACCCTCCTTGGCATGTGTCATAGCTGGAAATCCAAGGAACTTGACAACCTCACACCAGATGAACTTTATGCCTTGTCAAGATCAGACTACTAG 1059 0.424 MDAKAEPPQNPAKRHKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGICSKVFSQQGCQLCLTLFANPRSLTEHRETCRLTAPVPLGTSALPYISPQFDCRDSSNENLADSRPGAIAIDCEMVGGGSDGSLELCARVCLIDEDENLIFHTYVRPQLPVTNYRYDITGLTEEHFRDAMPLKKVQEKILQILYNGESIGRARLDGGKARFLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQTGTHDPYEDCVSALRLYKRIRGQSHQDEGYGTLTPSDTLLGMCHSWKSKELDNLTPDELYALSRSDY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi196g00030 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Sebi196g00030 352 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Sebi196g00030 352 Gene3D Classic Zinc Finger 2 65 - -
Sebi196g00030 352 Gene3D - 135 315 IPR036397 GO:0003676
Sebi196g00030 352 Pfam Exonuclease 139 302 IPR013520 -
Sebi196g00030 352 SUPERFAMILY Ribonuclease H-like 139 305 IPR012337 -
Sebi196g00030 352 SMART exoiiiendus 137 311 IPR013520 -
Sebi196g00030 352 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Sebi196g00030 352 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 310 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi196g00030 Sebi-Chr196 1010831 1013529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi196g00030 1 352 C2H2 Transcription Factor Family AT3G27970 51.841 1.79e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi196g00030 K18327 - gmx:100788682 619.387