Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00092 ATGGAGGGGAAAGATGAAGATGTGAGACTGGGAGCCAACAGGTACAGAGAGAGGCAACCAATAGGAACTGCTGCTCAGGCTCCAGATAGCAAAGACTACAAAGAACCTCCCTCAGCACCTCTCTTTGAGCCTGGGGAGTTGTCATCATGGTCTTTCTACAGAGCAGGAATAGCAGAGTTTGTGGCAACATTCTTGTTTCTTTACATCACAGTGTTAACAGTGATGGGTGTGGCCAAATCAAACAGCAAGTGCTCCACAGTTGGTGTCCAAGGCATAGCTTGGGCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGCATCTCAGGGGGTCACATTAACCCGGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTGTCTCTGACAAGGGCAGTGTTTTACATAATTATGCAGTGTTTGGGAGCTATATGTGGTGCTGGTGTAGTGAAGGGGTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGCTAACACTCTTAGTAAAGGATACACCAAAGGTGAAGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTATACTGTCTTCTCTGCTACTGATGCCAAGCATTTTGGCACCACTGCCTATTGGTTTTGCTGTCTTTCTGGTGCATTTGGCTACAATTCCTATTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCCTTATATACAACAAGGACCAAGCTTGGGACGACCATTGGATTTTTTGGGTTGGGCCTTTTATTGGAGCAGCACTTGCAGCTCTGTACCATCAGATAGTAATCAGGGCTATTCCCTTCAAGTCAAAGTGA 837 0.4719 MEGKDEDVRLGANRYRERQPIGTAAQAPDSKDYKEPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSNSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQPHQYERLGGGANTLSKGYTKGEGLGAEIVGTFVLVILSSLLLMPSILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00092 278 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Sebi195g00092 278 Gene3D Glycerol uptake facilitator protein. 39 277 IPR023271 -
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 MobiDBLite consensus disorder prediction 1 36 - -
Sebi195g00092 278 SUPERFAMILY Aquaporin-like 47 271 IPR023271 -
Sebi195g00092 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 274 IPR034294 -
Sebi195g00092 278 CDD MIP 54 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 FunFam Probable aquaporin PIP1-2 39 278 - -
Sebi195g00092 278 NCBIfam MIP family channel protein 58 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi195g00092 278 Pfam Major intrinsic protein 46 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00092 Sebi-Chr195 1318725 1320368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00092 1 278 Major Intrinsic Protein MIP AT4G23400 81.185 3.12e-160 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00092 K09872 - cave:132192212 505.368