Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00062 ATGAAGAGACTCAGATTGCTTCAACTTGCTGGTGTACAGCTTGATGGAGATTTTGAATATCTCTCAAGAAATCTGAAATGGCTGTGTTGGCATGGATTTTCATTAGAATACATACCTACAAACTTTTATCAAGGAAATTTAGTTTCCGTTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAAAGAGGCCCAGACAGACTCAGCCATAGCTGTTAAACTTATTCAGGAGAGTTTCCCTCCTTCTCACCCCTGCAGACCACTCATTTCAGCCATCTCTCTTCTCAAGGGGCAATGGGAGGTGATCATCACTCACACCTATAGGGAAGCCAACACTGCTGCAGACTGGATGGCAAACTATGCCTTCAATTTTCCTTATGGTATCCACATTCTAGATACCCCTCCTGTAGGCATTTCGAACCTTCTTAGAGCTGATAGGATGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCTCATCATTTGACACAGACCCCGGACTTCTCAAACATGCCTAATCTTGAAAAGCTAGTACTCACAGATTGTCCAAGCCTGTCTGAGGTTTCCTATAGCATTGGACATCTCAATGAAGTTCTTCTAATAAATTTGAAAGACTGCATAAGCCTTCGTAAACTTCCAAGAAGCATCTATAGTTTGAAATCTCTGAAAACCCTCATTCTTTCTGGATGTTTGATGATTGACAAGTTGGAAGAGGACTTCGAACAGATGGAATCTTTGACAACCCTGATCGCAGATAAGACTGCAATAACAAGAGTGCCCTTTTCAGTAGTGAGGTCAAAAAGCATTGGATATATTTCTCTGTGCGGCTATGAAGGATTCTCACGCGATGTGTTTCCTTCTATCATTAGGTCTTGGATGTCACCAACAAATAATCTATCATCCCTAGTTCAAACATCTGCTGGCATGTCATCTCTTGTTTCTTTGAATATACCAAATAGTGGGTCCCACGATCTATCATCTATTTCCAAGGACCTTCCAAAGCTTCGAAGTCTTTGGGTGGAGTGTGGTTCAGAACTTCAACTTTCTCGAGATGTAGCAAGAATTCTGGATGCCTTATATGCCACAAATTCTACGGAATTGAAATCAACTGCAACTACATCACAAAATATGACTATCAGTGGGTGTGATGTTACTTTGCTCCCCAGTGACAATTATCCAGATTGGTTAGCCTTCGATTGCGAAGGTTCTTCTGTAACTTTTGAAGTTCCTCGAGTGAATGGGCGTAGCTTGAAGACAATGATGTGCATTGTCCATTATTCTACCCCAGATGATATAACATCAGATGGCCTCAAAAATGTGTTGGTAATAAATTACACAAAGACCATCATTCAGCTCTATAAGAGAGACACATTAGCCTCCTTTGAAAATGATGAGTCGGAGAGAGTTGTATCAAATATAGAACCTGGTAACAAAGTGAAGGTGGCTGTTGTTTTTGAGAATGGAATCATTGTGAAGAAGACAACAATTTATCTCATTTATGAGGAAGCAATTAATGGGAAAATGGAACACTGCTATGCCGCAGATAAGAATGAAATTATTCCTAGTGGTGATGAAAATGAACACATTGTGAGCAGGATCTGTCCTCAAGTGGAGTCCACGGATGACTTCAAACAAAAGCAAAAAAGAAGAAAATCCGAATAA 1659 0.402 MKRLRLLQLAGVQLDGDFEYLSRNLKWLCWHGFSLEYIPTNFYQGNLVSVELENSNVKLVWKEAQTDSAIAVKLIQESFPPSHPCRPLISAISLLKGQWEVIITHTYREANTAADWMANYAFNFPYGIHILDTPPVGISNLLRADRMEKLKILNLSHSHHLTQTPDFSNMPNLEKLVLTDCPSLSEVSYSIGHLNEVLLINLKDCISLRKLPRSIYSLKSLKTLILSGCLMIDKLEEDFEQMESLTTLIADKTAITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIRSWMSPTNNLSSLVQTSAGMSSLVSLNIPNSGSHDLSSISKDLPKLRSLWVECGSELQLSRDVARILDALYATNSTELKSTATTSQNMTISGCDVTLLPSDNYPDWLAFDCEGSSVTFEVPRVNGRSLKTMMCIVHYSTPDDITSDGLKNVLVINYTKTIIQLYKRDTLASFENDESERVVSNIEPGNKVKVAVVFENGIIVKKTTIYLIYEEAINGKMEHCYAADKNEIIPSGDENEHIVSRICPQVESTDDFKQKQKRRKSE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00062 552 Pfam Reverse transcriptase-like 65 121 IPR002156 GO:0003676|GO:0004523
Sebi195g00062 552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 365 IPR044974 GO:0006952
Sebi195g00062 552 SUPERFAMILY L domain-like 20 340 - -
Sebi195g00062 552 Gene3D Ribonuclease Inhibitor 122 234 IPR032675 -
Sebi195g00062 552 Gene3D Ribonuclease Inhibitor 235 389 IPR032675 -
Sebi195g00062 552 CDD RNase_H_like 23 119 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00062 Sebi-Chr195 882483 886580 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00062 1 262 WRKY Transcription Factor Family AT4G12020 27.174 2.86e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00062 - - lja:Lj0g3v0331109.1 660.218