Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00048 ATGGCTGGCCCTTTTGATATGATTAGTGTTATTCACCCAGGGAAAGACTCATGGAGGCTGAGGGTGAGGGTTGTTCGCCTGTGGGAAATGTGTTCTATTGCTGAACCTGCAAAGCCATTTGCCGTTGATATGCTGTTAATTGACATTGAGGGTGGAAAGATCCAAGCCTCAATTCGGAAGCCTATGATGAAGAAGTTTAGAAACCTCATTGCTGAGGGTGGGGTGTACACAATGCTGAACTTTGCGGTTATAAAGAATGTTGGAAATTACCTTGCTTCAAGGCATGAGTATAAACTATTATTTGGTGCAAAAACCAAAGTTTTTCCATCTCAGTCCGATGTCATACCAGGTGTTGGATTATCTTTAATGAGTTCTGAGCAGATATCAAAGACCAACGGAGAATCAAACTTCCTCTTTGATTTTATGGGTATATTAACCGCTGTGTCTGCTAAAAAAGAGGTTGAAACGGATGGGAGGAAGACCAGGATGATGGAAATGGAGCTTGCTGATGACAAGGGGAGGATGAGGTGCACCGTTTTTGGGAATTATGTGGACACATTGAAGGAGTGTGTGGCCTCAGGTGTTGCTCCATTACCGGTGGTTGTGGCCCAACTTTTTAAAGTCAGGCTGTACAGGGGTACTGTTGTTTTACAAAATGTGAACAACACATCGAGGATCTTGTGGAATCCTGATATTCCAGAGGCAATTGATTTTAGGAATAGCTTGGCATGCCATGGAATTGACTCTGATGTTGAGATTGGTGTTATTGAGGGGGGAAATCGTGCTGTTCCGCTGTCTGATGAATTCCTTAGATTGTATCCAAGGAAATCTGTTAATGAATTGCAGATAACTGAGGAGGAAGGGATTTTCATAGTTGATGCCACCATTGTTTCGGTTATGAAGGACGAACAATGGTGGTATGGGGCTTGCAAGTGTCACAAGGCAGTTACACCAGATGGGGGACTTTACTACTGTTCTAATTGCTCAACTCATGTAGTTGAAGTTACCCCAAGATATAAGTTGAGGGTTGAAGTTTTCCGTTGGGACGACTCTGCTTCCTTTATTCTCTTCGATTCTGACTGTGTTTATCTGCTTGGGAAGACTTGCAAGGATCTGCTTGCAGAGTGCAGGGGTTTAAAGGCCGGTGAGCACCCACCCGATTTCAGGTGCCTCATTGGCAAGGATCTTCTCTTCAAGGTAGAGAAAACAGCTGAATATGCTTTCAGTTACGATGATTCCTTTAAAGTTAAAAAGGTGTGTGATGACAAGGAAATTATTCAACAATATAAGAAATCCTTTAGTGTTGAGACTCCTTTGAAGTCTAAATTTCAGCCCCCTTTTCCCGAGGTTGATGGTGAAGGAAATTCTCAGAGTCCCACTGATGCTATGACTGGTAGTATTGAGGCCATTGGTGATATGTCTCTCAATTCAGTCGGCTTTACTGATGCATCATCCAACTCCAGTGTGCATATGTCTCTTCACAGCAGCTCCAGTGTGCAATGCTCCAACACCAACCATGATGATGAGGGAGATGATGACACCCCACTTACATTCAAGCGTCGCAAGCTGAAGCCGATTAAGTTAGAGGAAGAATAG 1596 0.4348 MAGPFDMISVIHPGKDSWRLRVRVVRLWEMCSIAEPAKPFAVDMLLIDIEGGKIQASIRKPMMKKFRNLIAEGGVYTMLNFAVIKNVGNYLASRHEYKLLFGAKTKVFPSQSDVIPGVGLSLMSSEQISKTNGESNFLFDFMGILTAVSAKKEVETDGRKTRMMEMELADDKGRMRCTVFGNYVDTLKECVASGVAPLPVVVAQLFKVRLYRGTVVLQNVNNTSRILWNPDIPEAIDFRNSLACHGIDSDVEIGVIEGGNRAVPLSDEFLRLYPRKSVNELQITEEEGIFIVDATIVSVMKDEQWWYGACKCHKAVTPDGGLYYCSNCSTHVVEVTPRYKLRVEVFRWDDSASFILFDSDCVYLLGKTCKDLLAECRGLKAGEHPPDFRCLIGKDLLFKVEKTAEYAFSYDDSFKVKKVCDDKEIIQQYKKSFSVETPLKSKFQPPFPEVDGEGNSQSPTDAMTGSIEAIGDMSLNSVGFTDASSNSSVHMSLHSSSSVQCSNTNHDDEGDDDTPLTFKRRKLKPIKLEEE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00048 531 CDD RPA1_DBD_C 285 419 IPR047192 -
Sebi195g00048 531 CDD RPA1_DBD_A_like 19 107 - -
Sebi195g00048 531 Gene3D - 270 431 IPR012340 -
Sebi195g00048 531 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Sebi195g00048 531 Gene3D - 4 109 IPR012340 -
Sebi195g00048 531 PANTHER OS03G0429900 PROTEIN 7 459 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi195g00048 531 MobiDBLite consensus disorder prediction 489 504 - -
Sebi195g00048 531 SUPERFAMILY Nucleic acid-binding proteins 273 417 IPR012340 -
Sebi195g00048 531 MobiDBLite consensus disorder prediction 489 531 - -
Sebi195g00048 531 Pfam Replication factor-A C terminal domain 290 374 IPR013955 -
Sebi195g00048 531 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Sebi195g00048 531 Gene3D - 115 249 IPR012340 -
Sebi195g00048 531 MobiDBLite consensus disorder prediction 505 531 - -
Sebi195g00048 531 CDD RPA1_DBD_B_like 140 242 - -
Sebi195g00048 531 MobiDBLite consensus disorder prediction 444 464 - -
Sebi195g00048 531 SUPERFAMILY Nucleic acid-binding proteins 124 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00048 Sebi-Chr195 635183 637823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00048 8 372 Core DNA Replication Machinery Family AT5G45400 23.590 8.60e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00048 - - lja:Lj6g3v0884310.1 414.461