Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00044 ATGGAACCGGAAGAAGCCACAGCGATGGCCACCGCCATCGTTGCATTCGACCCCGACGGAAGCGGCGACGAGGGGTTGCTGACGCCAGGCGAAGGCGGTGGCGGCAAAGGCAAAAGCAGAGACAGAGTAAAGGGTCCTTGGTCTCCGGAAGAGGACGCCATTCTGAGCCGCCTTGTAAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGTGGGATCGCCGGAAGATCCGGCAAGTCCTGCCGGCTCCGGTGGTGCAATCAGCTCGATCCTTCCGTGAAGCGCAAGCCCTTCACTGGTTCGTATCTAGTTCCTCATTCATTTCACTCATAG 336 0.5923 MEPEEATAMATAIVAFDPDGSGDEGLLTPGEGGGGKGKSRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTGSYLVPHSFHS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00044 111 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Sebi195g00044 111 PANTHER MYB PROTEIN-RELATED 44 100 - -
Sebi195g00044 111 SMART sant 43 92 IPR001005 -
Sebi195g00044 111 Gene3D - 43 95 - -
Sebi195g00044 111 FunFam MYB transcription factor 44 95 - -
Sebi195g00044 111 CDD SANT 46 88 IPR001005 -
Sebi195g00044 111 SUPERFAMILY Homeodomain-like 40 100 IPR009057 -
Sebi195g00044 111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 94 IPR017930 -
Sebi195g00044 111 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Sebi195g00044 111 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00044 Sebi-Chr195 578279 578614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00044 40 110 MYB Transcription Factor Family AT3G55730 66.667 1.88e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi195g00044 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00044 K09422 - pvu:PHAVU_010G075600g 137.887