Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00041 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCTCATTTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGAGTGAAAGAACCTGGCCCAGTTTTGGTGAGTTCAGCTTGGAGCAACTGAAGGCTGCTACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTTCAAAGGGAAACTTGAGAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCTGATTCTCGCCAATTCCTTGAAGAAGCCAAACAAGTGGGGAGCCTTAGAAGTGAACGTTTGGCAAATTTGATTGGTTGTTGCTATGAAGGGGAGGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTTGCTAAGCATCTCTTTCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACCAGTAAAGGCAGGGGTTTGTATCATGATCTCAATGCTTACAGGATCTTGTTTGATCAGGATGGTAATCCAAGGTTGTCTTGCTTTGGGCTAATGAAGAACAGCAGAGATGGAAAGAGTTACAGTACAAATTTGGCTTTCACTCCTCCTGAGTACTTAAGGACTGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGGACCTTGTTGTTGGATCTCTTAAGTGGTAAACACATTCCCCCAAGCCATGCACTAGACCTGATACGTGGCAAAAACTTCTTGATGCTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCCCGTTGCTTACAGTATGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTGCATCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCTTCATATGTTCTGATGGGTCTCCGGCTTGAAACTGCATCCTCAACAAAGGCATTGTCATTAACACCATTTGGTGAAGCTTGTTTGAGATTGGATCTTACTGCCATACATGAAATATTAGAGAAGATTGGTTACAAGGATGATGAAGGAATTGCAAATGAGCTTTCATTTCAATTGTGGACTAGTCAAATGCAGGAGACCTTGAATTTGAAGAAGCATGGAGATACTGCTTTTAGAGCTAAGGACTTTGTCACTGCCATTGACTGCTACACACAATTCATAGATGGAGGGACAATGGTGTCACCAACAGTGTATGCAAGGAGATGCTTAGCTTATTTGATGAATGACATGCCACAGGAAGCATTAGGGGATGCTATGCAAGCCCAGGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGTCTTGGAATGGAGAATGATGCACAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAAAAGAAACAAAAATTGA 1473 0.4386 MGARCSKFSFCWFHSHFKPSVLESSDQENGGKSERTWPSFGEFSLEQLKAATNGFSSENIVSEHGEKAPNVVFKGKLENGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGCCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQKETEVPSYVLMGLRLETASSTKALSLTPFGEACLRLDLTAIHEILEKIGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLAYLMNDMPQEALGDAMQAQVVSPEWPTALYLQAACLFSLGMENDAQETLKDGTNMEAKRNKN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00041 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 489 IPR045845 GO:0004672|GO:0009742
Sebi195g00041 490 SUPERFAMILY TPR-like 386 479 IPR011990 GO:0005515
Sebi195g00041 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Sebi195g00041 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Sebi195g00041 490 Gene3D Transferase(Phosphotransferase) domain 1 135 326 - -
Sebi195g00041 490 Gene3D Tetratricopeptide repeat domain 382 490 IPR011990 GO:0005515
Sebi195g00041 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Sebi195g00041 490 ProSiteProfiles Protein kinase domain profile. 58 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi195g00041 490 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Sebi195g00041 490 SUPERFAMILY Protein kinase-like (PK-like) 33 319 IPR011009 -
Sebi195g00041 490 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00041 Sebi-Chr195 558561 561962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00041 43 309 Glycoside Hydrolase AT3G07070 34.237 5.06e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi195g00041 PK_Tyr_Ser-Thr 5.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00041 - - gmx:100814477 951.044