Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi195g00022 ATGGCTGCTGTAAATGAAGGCGCTGAACAGGAATTTGCACCACAAAATAAGAAGCCACCTTCTGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCTTTGATGAGGCCTGGTGGGGGTGATTCTGGACCTTCAGATGGTGACCAGGTTATCTATCACTGCACAATTCGAACTTTGGATGGAGTAATTGTGGAATCTACCAGATCAGAACATGGAGGCAGGGGCACACCGATAAGACATGTTTTGGGCAAAAGCAAGATGCTATTGGGCTTGCTAGAAGGAATTCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATGGTTTTCCTAAGGACGATGAACTTCATTTTGAAATTGAGATGATGGAATTTTTCAAAGCCAAGGTTGTTACTGATGATATGGGAGTTGTAAAAAAGGTAGTATGTGAAGGGCAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTAAAGGCTTGGATTTCAGCAAAGACAGTGGCTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTCACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGGATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTTACCCGCCAGTATTTAACTGAGTCTCCTCTAATGTCTCTAACGGAAGATTATGATGAAGTCCACTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTGAGGGACATGCTTGGAGATGGACGCCTAATAAAACGCCGGATTCGTGATGGAAAAGGTGACTTTCCAATGGATTGCCCACTTCATGATAGTCTACTCCGTGTTCATTACAAGGGCACTATCCTCAATGAAGAAAAAAGGGTATTTTATGATACAAGAGTTGATAATGATGGTCAGCCATTGGAGTTCTGTTCTGGAGAAGGCCTTGTACCAGAGGGATTTGAAATGTCTGTTCGTCTAATGCTTCCTGGAGAGATAGCTCTTGTCACATGTCCCCCTGACTATGCTTATGATAAGTTCCCCAGGCCTTCAAATGTCCCCGAGGGTGCTCATGTTCAATGGGAAATTGAGCTTCTAGGTTTTGAAATGCCAAAGGACTGGACTGGAATGGACTTTAAAAGTATAATGAATGAAGCTGAAAATATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGGAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCACGTTAATCCACAAGATGACGAGGAAGGAAAAGTTTTTGTAGACACACGTAATTTGCTACACCTGAATGTTGCTGCATGCTATCTAAAGTTGGGAGAATGCAAAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGTCTTTATCGCCGTGGAATGGCCTACATGGCTGCCGGAGATTTTGATGAAGCAAGGGCTGATTTCAAAATGATGATGAAAGTCGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTTTAAAACTGAGGCAAAAGGAGCAGGAAGTAGAGAAGAAAGCTCGGAAACAATTTAAAGGGCTATTTGATAAGAAGCCTGGAGAAATTGCAGAAGCTAAAGCTAACGAAGATGGAGATGAGATGACAAGTGAAAGCCAGAAGGATGGTGAAGTACATGGGGACTCAGATGGAACAAATTCAGAGGATTCACATGAAGCGGCACCCCATGCACATCATATGGGTTGGTTCTCTCACTTTTGGTCTACTGGGACAAAACTTTTTTCATCTCTTGGGCTTCAAAGATGTGCCATACTATAA 1875 0.4229 MAAVNEGAEQEFAPQNKKPPSEDEKRKKKIVPGSLMKALMRPGGGDSGPSDGDQVIYHCTIRTLDGVIVESTRSEHGGRGTPIRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMKPQLHYGEDDCPISAPDGFPKDDELHFEIEMMEFFKAKVVTDDMGVVKKVVCEGQGWESPREPYEVKAWISAKTVAGKLIMSHTEGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTRQYLTESPLMSLTEDYDEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTILNEEKRVFYDTRVDNDGQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPSNVPEGAHVQWEIELLGFEMPKDWTGMDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFVDTRNLLHLNVAACYLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFDEARADFKMMMKVDKSTESDATAALLKLRQKEQEVEKKARKQFKGLFDKKPGEIAEAKANEDGDEMTSESQKDGEVHGDSDGTNSEDSHEAAPHAHHMGWFSHFWSTGTKLFSSLGLQRCAIL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi195g00022 624 MobiDBLite consensus disorder prediction 555 593 - -
Sebi195g00022 624 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 385 IPR001179 GO:0003755
Sebi195g00022 624 MobiDBLite consensus disorder prediction 1 52 - -
Sebi195g00022 624 SUPERFAMILY FKBP-like 153 261 - -
Sebi195g00022 624 Gene3D Tetratricopeptide repeat domain 395 550 IPR011990 GO:0005515
Sebi195g00022 624 SUPERFAMILY FKBP-like 250 384 - -
Sebi195g00022 624 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 148 IPR001179 GO:0003755
Sebi195g00022 624 FunFam Peptidylprolyl isomerase 263 387 - -
Sebi195g00022 624 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Sebi195g00022 624 SUPERFAMILY FKBP-like 24 152 - -
Sebi195g00022 624 SMART tpr_5 451 484 IPR019734 GO:0005515
Sebi195g00022 624 SMART tpr_5 485 518 IPR019734 GO:0005515
Sebi195g00022 624 SMART tpr_5 402 435 IPR019734 GO:0005515
Sebi195g00022 624 FunFam Peptidylprolyl isomerase 152 262 - -
Sebi195g00022 624 Gene3D - 2 150 IPR046357 GO:0003755
Sebi195g00022 624 FunFam Peptidylprolyl isomerase 390 546 - -
Sebi195g00022 624 MobiDBLite consensus disorder prediction 16 31 - -
Sebi195g00022 624 Gene3D - 151 262 IPR046357 GO:0003755
Sebi195g00022 624 PANTHER PEPTIDYLPROLYL ISOMERASE 263 606 - -
Sebi195g00022 624 Gene3D - 263 384 IPR046357 GO:0003755
Sebi195g00022 624 Pfam Tetratricopeptide repeat 486 509 IPR019734 GO:0005515
Sebi195g00022 624 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 294 382 IPR001179 GO:0003755
Sebi195g00022 624 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 176 258 IPR001179 GO:0003755
Sebi195g00022 624 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 144 IPR001179 GO:0003755
Sebi195g00022 624 FunFam Peptidylprolyl isomerase 9 151 - -
Sebi195g00022 624 SUPERFAMILY TPR-like 399 540 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi195g00022 Sebi-Chr195 276257 288612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi195g00022 35 550 Calmodulin-binding Proteins AT5G48570 30.418 9.80e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi195g00022 - - gmx:100818201 1156.74