Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi193g00071 ATGAAGGGTGGCAAATCTAAAGCCGAATCTAAGAAAGCCGATGCCAAACTTGCTGTGAATACGAAGAAAGGTGGCGCAGTCACCAAGCCGGCCAAGAAGGGGAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGAACATCCTAACAACAAAGCTGTCTCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTCTGATGCTGAGAAAGCACCATATGTGGCAAAGGCAGAGAAGCGAAAGGTTGAGTATGAGAAGAATATGAGAGCCTATAACAACAAACAGGCTGAAGGTCCTACTGCTGCGGATGAAGAATCTGAGAAGTCTTCAGAGGTGAACGATGAGGATGAAGGAGATGATGAGGGCAGTGACGAGGAGGAGGATGACGATGAGTAG 456 0.4846 MKGGKSKAESKKADAKLAVNTKKGGAVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKEHPNNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKVEYEKNMRAYNNKQAEGPTAADEESEKSSEVNDEDEGDDEGSDEEEDDDE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi193g00071 151 Gene3D High mobility group box domain 27 128 IPR036910 -
Sebi193g00071 151 SUPERFAMILY HMG-box 30 121 IPR036910 -
Sebi193g00071 151 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 112 IPR009071 -
Sebi193g00071 151 MobiDBLite consensus disorder prediction 92 110 - -
Sebi193g00071 151 SMART hmgende2 42 113 IPR009071 -
Sebi193g00071 151 MobiDBLite consensus disorder prediction 128 151 - -
Sebi193g00071 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 146 IPR031061 -
Sebi193g00071 151 MobiDBLite consensus disorder prediction 77 151 - -
Sebi193g00071 151 Pfam HMG (high mobility group) box 43 112 IPR009071 -
Sebi193g00071 151 CDD HMG-box_AtHMGB1-like 44 104 - -
Sebi193g00071 151 MobiDBLite consensus disorder prediction 1 45 - -
Sebi193g00071 151 Coils Coil 94 114 - -
Sebi193g00071 151 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi193g00071 Sebi-Chr193 1391460 1393158 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sebi193g00071 HMG_box 5.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi193g00071 K25507 - gmx:100500173 182.956