Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi193g00068 ATGAAGGGTGGCAAATCTAAAGCCGAATCTAAGAAAGTCGATGCCAAACTTGTTGTGAATAAGAAGAAAGGTGGCACAGTCACCAAGCCGGCCAAGAAGGGAAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGACCATCCTAACAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTCTGATGCTGAGAAAGCACCATATGTGGCAAAGTCAGAGAAACGAAAGGTAGAGTATGAGAAGAATATGAGAGCCTACAACAGCAGACAGGCTGAAGGTCCTACTGCTGCAGATGAAGAATCGGAGAAGTCAATGTCAGAAGTGAATGATGAGGATGAAGGAGATGATGAGGGGAGTGACGAGGAGGAGGATGACGATGAGTAG 459 0.4684 MKGGKSKAESKKVDAKLVVNKKKGGTVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKDHPNNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKNMRAYNSRQAEGPTAADEESEKSMSEVNDEDEGDDEGSDEEEDDDE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi193g00068 152 Pfam HMG (high mobility group) box 43 112 IPR009071 -
Sebi193g00068 152 MobiDBLite consensus disorder prediction 92 110 - -
Sebi193g00068 152 MobiDBLite consensus disorder prediction 1 47 - -
Sebi193g00068 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 147 IPR031061 -
Sebi193g00068 152 MobiDBLite consensus disorder prediction 129 152 - -
Sebi193g00068 152 Gene3D High mobility group box domain 27 138 IPR036910 -
Sebi193g00068 152 MobiDBLite consensus disorder prediction 1 19 - -
Sebi193g00068 152 MobiDBLite consensus disorder prediction 77 152 - -
Sebi193g00068 152 SUPERFAMILY HMG-box 30 122 IPR036910 -
Sebi193g00068 152 CDD HMG-box_AtHMGB1-like 44 104 - -
Sebi193g00068 152 Coils Coil 94 114 - -
Sebi193g00068 152 SMART hmgende2 42 113 IPR009071 -
Sebi193g00068 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 112 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi193g00068 Sebi-Chr193 1355413 1356929 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sebi193g00068 HMG_box 4.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi193g00068 K25507 - gmx:100500173 195.667