Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi193g00028 ATGGCAACTTTGCTGGGCAAGGAGCATGATTTGAACCTGAAGGAAACAGAGCTTTGCCTGGGTTTGCCTCCAAGGGCCAACGGAAAGAGAGGGTTCTCTGAAACAGTTGATCTAAAGCTTAATCTTCAATCCAAGCAAGATCTGAATGAAAATTTGAAGGATGTCTCAAAGGAAAATACCCTCCATAAGGATCCAGCAACAAAGCCACCATCTAAGGCACAAGTGGTTGGTTGGCCACCAGTGCGGTCATACAGGAAGAATATTATGTCACAAAAGGGTAATAGTGAAGATGGCACTGATCAGAAGACAACAAATAGCACTAATTCTGGGGCACTTGTCAAGGTTTCCATGGATGGTGCTCCTTACCTTCGCAAAGTGGACTTGAAAATCTACAAAAGCTACCAAGAATTATCCTCTGCTCTGCTCAAAATGTTCAGATCCTTCACCATGGCAGAAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGGTGGATCTTCTAAACAGCTCTGAGTATGTGCCAACCTATAAAGATAAGGATGGGGACTGGATGCTCGTTGGTGATGTTCCATGGGACGCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGAACTGGCCTTAA 642 0.4455 MATLLGKEHDLNLKETELCLGLPPRANGKRGFSETVDLKLNLQSKQDLNENLKDVSKENTLHKDPATKPPSKAQVVGWPPVRSYRKNIMSQKGNSEDGTDQKTTNSTNSGALVKVSMDGAPYLRKVDLKIYKSYQELSSALLKMFRSFTMAEGNYGAQGMIDFMNESKLVDLLNSSEYVPTYKDKDGDWMLVGDVPWDAKSHGKMQKQKLNWP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi193g00028 213 ProSiteProfiles PB1 domain profile. 110 213 IPR000270 GO:0005515
Sebi193g00028 213 Pfam AUX/IAA family 26 198 IPR033389 -
Sebi193g00028 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 198 IPR003311 GO:0005634|GO:0006355
Sebi193g00028 213 MobiDBLite consensus disorder prediction 54 76 - -
Sebi193g00028 213 Gene3D - 104 210 - -
Sebi193g00028 213 SUPERFAMILY CAD & PB1 domains 105 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi193g00028 Sebi-Chr193 573663 575311 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi193g00028 86 213 B3 DNA Binding Superfamily AT2G46530 30.216 7.16e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi193g00028 AUX_IAA 3e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi193g00028 K14484 - gmx:100810762 304.293