Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi193g00024 ATGGAAAAGACAGTGGCATATGAGAATGATCTCAACCTCAAGGCAACAGAACTTAGATTGGGGTTGCCAGGGACTGAGGAAAAGGAGGAGAAAACCATGGCTTGTGTGAAAAGCAACAAAAGGCAATTGCCTGAAACTTCTGAAGAGTCTGTTTCTATTTCCAAGGCCTCACATGACCAACAAGTTGAGAGTGATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCTGGAAGCTGAGGGTGCTGGGATCTATGTGAAAGTGAGCATGGATGGTGCTCCTTACCTCAGGAAGATTGACTTGAAGGTCTATAGGGGCTATCCAGAACTCCTCAAAGGTTTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 579 0.4542 MEKTVAYENDLNLKATELRLGLPGTEEKEEKTMACVKSNKRQLPETSEESVSISKASHDQQVESDAAPPAKAKIVGWPPIRSYRKNSLLEAEGAGIYVKVSMDGAPYLRKIDLKVYRGYPELLKGLETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGTEARGLGCGV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi193g00024 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 186 IPR003311 GO:0005634|GO:0006355
Sebi193g00024 192 Gene3D - 90 192 - -
Sebi193g00024 192 Pfam AUX/IAA family 40 189 IPR033389 -
Sebi193g00024 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Sebi193g00024 192 SUPERFAMILY CAD & PB1 domains 88 181 - -
Sebi193g00024 192 MobiDBLite consensus disorder prediction 39 61 - -
Sebi193g00024 192 MobiDBLite consensus disorder prediction 22 36 - -
Sebi193g00024 192 MobiDBLite consensus disorder prediction 22 68 - -
Sebi193g00024 192 FunFam Auxin-responsive protein 90 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi193g00024 Sebi-Chr193 415394 416313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi193g00024 98 188 B3 DNA Binding Superfamily AT2G46530 38.462 7.62e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi193g00024 AUX_IAA 6.1e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi193g00024 K14484 - gmx:100800212 329.717