Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi193g00012 ATGGTTGGATTGGAACTCATACCTGTAGGTACAATTTTGGCTGTTCTAACTAGCCAGGTGGTGAGAACAGCTAATGCAGCAATGGATGTTCTTGTTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAGTAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTTTACTTACTGATGAAGTGCAGATACATAGTCAAGGAGGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTCCTATCTAGAATTTCTGATCAGGTCAACAGATTACAGAGTGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGCTGAACCATGGAATTAAGGAGCAGAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTACCAGTTGAGCCTTCAGAGATAAGCAAAGAGCTTGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAATTAGCTGAATTTATTTTTCTGGAGCAGATCATTGAGCTACTCTCTCGAGCTGATGCTGCTAGAGATTATGAGGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTAATAGAGCGATATGGTTCAAAGGAAAATTATATTCCACCACTTAATTCTTTCCTTTGTTGCATAACTGGAGCTGTCATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCCTGGTTTGTTGATGGCAAGAGGACTGACCCTGAAACAGAAGAGGTTCTTGAAGATACTACCTTGAGGTCAAACATTCGATTAAGAGAATCTATTATAGAGTGGAGAGAACTTAATTACTGCTTTGAAATAAAGTCTATCAGGGAAAACCTATCAACCAGTTCTAACGTATTGTTGCAAGAATCCCTTAGCCAAATACAGGCTCTCATAGGAGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGCTTACTGATATTATTATCACTATCCTTGGGAACTCTGTCTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGGTGGGGTCACATTATTTCCTGCTTACAAAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGACCGATCTGGCTGGAATAAAAGCTTCTGCAAAAAACTCTCTGAGCATCCCGGTGCAGTTTTTTACCTTGTTAGCCTTCTAAAGGATCCTGTCAGCGATTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTATTGAAATAGATGAGGAAAATATTTGCAGTGCCGCTAAGTTTGGCTGGTACAAACCTCTTGCTAATCGAATGATTCAAAGATTGGAGTCTTCAAGAATGTCAATGGCAAAAGTCATAGTTAATTTGGAATTGAAGGATTTAAACTTGAAACTCCTTGGTGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTAGCAGCATTGAATCAAAAGAATTGTCATTATCAGCCCTGGTTAAACTAGCAGGATTTCATGCCAATAAGGGGATTATTGCTGCATCTGGAGGCGTACCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACTCGGTCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATAGATTTCTTTGTTGATGGAGAAGGTAATCAACTCGAGTTAGATAGCATTATTACCAATTTGTTAGCTCTGCAGCAGAGTCCTAACTCAGCTCACAACTTCCGTAAGCCTGCATTACGCACTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCAGTTCTGGCAGCCAATGGTGTATCTCTAATACTTCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAGATTGCCATAAATCTTCTGTTTCTTTTCTCTCAACATGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCCAGAAGACTGGAAGCTTTAATTGGTTTCCTTGAGAATGATGATAATGATGATGTACAAATGGCTGCTGCAGGTTTACTAGCTAACCTTCCTAAATCAGAACGAGAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACTGATCCCACAAATATAGAATCACAGCGTGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAATACTGGTTCAGTAACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCAACTGGTTGCTGCTGGTGGTTTAGATCATCACGAGTTCCTTTATGTTCAGCACATGGGAGTGTATGCAATGTGACTTCAACATTTTGTCTATTGGAAGCAAATGCTTTACCTGGTTTGATAAAGCTATTACAGGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAAACACTTTCCACATTGGTTTTGGAAGACTATCCTCAGAGAGGAGCTCGTGTCTTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTCTTTGTCTCAAAGGAAATGGTTGAATACTATGGAATAGCAGCTAGATTACGTCTAGTTGGTCTGAATGGCATGAATATACATGGGGATGGTCACTTAAGGAGAAAAGCTGCCAGGGTACTGTCATTGCTCGAACGCTATTCAAAGTCATCGTCATCTGCAATATCTGGAGTTCTGGAGTGA 3054 0.4064 MVGLELIPVGTILAVLTSQVVRTANAAMDVLVDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYRNRGRFYLLMKCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQRVEFEASQSQLQIVDKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRWEKEEAANRKELAEFIFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYGSKENYIPPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFVDGKRTDPETEEVLEDTTLRSNIRLRESIIEWRELNYCFEIKSIRENLSTSSNVLLQESLSQIQALIGENSINKDWISIGGLTDIIITILGNSVSRDVKMKILITLKDAVEGHARNKEKVVESQGWGHIISCLQSDSRISKEAIDLLYELLQDRSGWNKSFCKKLSEHPGAVFYLVSLLKDPVSDSTGIAEKILMELIEIDEENICSAAKFGWYKPLANRMIQRLESSRMSMAKVIVNLELKDLNLKLLGEQGVIPPLLEMLSSSIESKELSLSALVKLAGFHANKGIIAASGGVPLVLDLMFSRRTRSFITIKCCEILEKLSSDDDGIDFFVDGEGNQLELDSIITNLLALQQSPNSAHNFRKPALRTLLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIREIAINLLFLFSQHEPEGVVEYLFRPRRLEALIGFLENDDNDDVQMAAAGLLANLPKSERELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTGCCWWFRSSRVPLCSAHGSVCNVTSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVLEDYPQRGARVLHESNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGIAARLRLVGLNGMNIHGDGHLRRKAARVLSLLERYSKSSSSAISGVLE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi193g00012 1017 Coils Coil 69 89 - -
Sebi193g00012 1017 Gene3D - 861 1013 IPR011989 -
Sebi193g00012 1017 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Sebi193g00012 1017 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Sebi193g00012 1017 Gene3D - 9 123 IPR036537 GO:0007166
Sebi193g00012 1017 SUPERFAMILY RING/U-box 248 329 - -
Sebi193g00012 1017 SUPERFAMILY ARM repeat 550 960 IPR016024 -
Sebi193g00012 1017 CDD MLKL_NTD 25 145 - -
Sebi193g00012 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 336 IPR013083 -
Sebi193g00012 1017 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Sebi193g00012 1017 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Sebi193g00012 1017 Coils Coil 127 154 - -
Sebi193g00012 1017 Gene3D - 491 853 IPR011989 -
Sebi193g00012 1017 CDD RING-Ubox_PUB 265 314 IPR045210 -
Sebi193g00012 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1009 - -
Sebi193g00012 1017 Gene3D - 337 490 IPR011989 -
Sebi193g00012 1017 SMART arm_5 759 799 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 673 713 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 920 960 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 408 447 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 802 842 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 577 619 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 537 576 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 876 916 IPR000225 GO:0005515
Sebi193g00012 1017 SMART arm_5 715 757 IPR000225 GO:0005515
Sebi193g00012 1017 SUPERFAMILY ARM repeat 335 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi193g00012 Sebi-Chr193 270973 275135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi193g00012 264 974 U-box Gene Family AT1G76390 26.938 1.76e-38 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi193g00012 - - gsj:114377374 1668.29