Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi192g00064 ATGGGATATGAAACCAGAAGGCTCTCAGATGAGTATGAGGTTTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGTACCAAAAAATCAAGCAGTGAGAAAACCTTAGTAGCCATCAAAACACTGAGAAGGTTAGGTGCCTCTAATAACAACCCTTCTGGTTTACCAAAAACAAAAGGTGGAGAGAAGAGTATAGCAACTATGAATATGATGGGGTTCCCCACATGGAGACAAGTTTCAGTCTCAGATGCCTTGTTGACCAATGAGATTCTTGTCATGAGGAGGATAGTGGAAAATGTTTCACCTCACCCCAATGTGATTGACCTCTATGATGTCTATGAGGACTCAAATGGGGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGCTGTGGTTCGCCAGATTGCAGCAGGATTAGAGGCTATTCATAGAGCTAACATTGTTCATAGGGACTTGAAGCCTGAGAATTGCCTTTTTTTGGACACCAGGAAGGACTCTCCTCTCAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCTGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACTAAGAGTGACATGTGGTCTCTAGGAGTAATTCTATATATCTTACTCTCTGGGTATCCACCTTTCATTGCTCCGTCTAATCGCCAAAAACAACAAATGATAGTACACGGGAATTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTTCCCAATCAGCAAAGCAATTGATTTCAAGTCTTCTGACTGTTGATCCTAGCAAGAGACCCAGTGCTCAACAGCTTCTGAGTCATCCATGGGTTATAGGTGAGAAAGCCAAAGATGATCAAATGGACCCTGAGATTGTCTCAAGGCTACAGAGCTTTAATGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAGTCTTCCTCAGAACCAAAAAACTGAGATCCTTGGTAGGAACCCATGATCTCAAAGAAGAGGAAATTGAAAATCTCAGGATACATTTCAAGAAGATATGTGCAAATGGAGACAATGCCACTCTCTCTGAGTTTGAGGAGGTGCTGAAAGCAATGAATATGCCATCATTGATCCCTCTAGCACCTCGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGAGAGATACTATGTGGGTTTTCTAGTCTGAAGAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCAGATGATTGTCTTCCAGCTGATATCACTGAACCTGGCAAATTGGATGAGATATTTGATTTAATGGATGCAAATAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGATGTAGTCCTCTCTTCTCTTCGCCCATAA 1575 0.4235 MGYETRRLSDEYEVSDVLGRGGFSVVRKGTKKSSSEKTLVAIKTLRRLGASNNNPSGLPKTKGGEKSIATMNMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAAVVRQIAAGLEAIHRANIVHRDLKPENCLFLDTRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAPSNRQKQQMIVHGNFSFYEKTWKGISQSAKQLISSLLTVDPSKRPSAQQLLSHPWVIGEKAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSSTVFLRTKKLRSLVGTHDLKEEEIENLRIHFKKICANGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDLMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi192g00064 524 PRINTS Recoverin family signature 363 382 - -
Sebi192g00064 524 PRINTS Recoverin family signature 409 430 - -
Sebi192g00064 524 PRINTS Recoverin family signature 433 452 - -
Sebi192g00064 524 PRINTS Recoverin family signature 499 519 - -
Sebi192g00064 524 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Sebi192g00064 524 CDD EFh 442 509 IPR002048 GO:0005509
Sebi192g00064 524 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 130 - -
Sebi192g00064 524 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Sebi192g00064 524 SMART serkin_6 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi192g00064 524 CDD STKc_CAMK 12 306 - -
Sebi192g00064 524 ProSiteProfiles Protein kinase domain profile. 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi192g00064 524 SUPERFAMILY Protein kinase-like (PK-like) 5 329 IPR011009 -
Sebi192g00064 524 Pfam EF-hand domain pair 440 509 IPR002048 GO:0005509
Sebi192g00064 524 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Sebi192g00064 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Sebi192g00064 524 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 134 324 - -
Sebi192g00064 524 SUPERFAMILY EF-hand 350 513 IPR011992 -
Sebi192g00064 524 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Sebi192g00064 524 Gene3D Phosphorylase Kinase; domain 1 5 135 - -
Sebi192g00064 524 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Sebi192g00064 524 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 350 519 - -
Sebi192g00064 524 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Sebi192g00064 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 484 - -
Sebi192g00064 524 Gene3D - 351 518 - -
Sebi192g00064 524 SMART efh_1 405 433 IPR002048 GO:0005509
Sebi192g00064 524 SMART efh_1 441 469 IPR002048 GO:0005509
Sebi192g00064 524 SMART efh_1 483 511 IPR002048 GO:0005509
Sebi192g00064 524 Pfam EF hand 410 425 IPR002048 GO:0005509
Sebi192g00064 524 CDD EFh 408 467 IPR002048 GO:0005509
Sebi192g00064 524 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Sebi192g00064 524 Gene3D Transferase(Phosphotransferase) domain 1 136 350 - -
Sebi192g00064 524 Pfam Protein kinase domain 90 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi192g00064 Sebi-Chr192 1580014 1584033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi192g00064 88 512 EF-hand Containing Proteins AT3G10660 37.757 9.80e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Sebi192g00064 Pkinase 9.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi192g00064 K13412 - gmx:732616 935.25