Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi192g00048 ATGGCAAACCCAGTTTCCCATTCATATCTGCTCCTTTTAATCTTGTTTCTTACCATCCATCTTTCAGAAGAGTTACAATTTTCTCAGTATCAGACACTTCTCAAAGTCCAGCAACTTCTTGGTTACCCTTCAGCACTAGGCAGCTACAGCAGCAACACAGATAATTGCAACATTGAACCTACCCCATCTTTGACACTAGTGTGCTATGAGGACAGCTTGACACAGCTGCATGTTGTTGGTAACAAGGGGTTTACCTCATTGCCTCAGAACTTCTCCTCAGACACTCTATTTGCCACACTAGGCAGTCTATCAAGCTTGAAAGTCCTTTCTTTGGTTTCTCTTGGTCTCTGGGGGCCTCTACCTGAAAGCATTGCTCAATTGTCTTCACTGGAAATACTTAACATTAGCTCAAATTACTTCAATGGAGCCATCCCAGTCCAAGTTTCACATCTGAAGAACCTGCAGTCTGTGGTACTTGATGATAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCCCTTCAAGGTTTGGCTGTGCTTAGTTTGAAGAATAATTGGTTTAGTGGGAACCTGCCAACTTCAGTGAAGTCCCTTGTTACTCTGAGAGTATTAGATCTGTCAAATAATCAGCTATCTGGGGAACTACCTAATCTTCATAATTTGTCAAACCTTCAAGTTCTTCATTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTTTGCCTACCAAGTTAGTTTCCCTTGTGCTTAGAAACAATAGCTTTAAGCTTAGTGTCCCTTCTAATATAAGTTCTTTCTATCAGCTCCAAAAGCTGGACCTTTCATTCAATGGCTTTGTGGGGCCATTTCCTCCATCCTTATTGTCACTGCCTTCCCTCAATTACCTTGATATCTCTTCAAATAAGTTCACTGGTTTGCTTTTCAAGAATTTCTCTTGCAATGATGATCTCCACTTTGTGAATTTATCTTCAAATCTTTTGAAAGGGGAACTTCCCACTTGTTTAAGACCAAAGACAAGGGTTGTTTTGTATACTAGAAACTGTTTATCAAATGAGAACCAAGATCAGCTCCCTTCCACCTTCTGCAGCAATGAGGCTCTGGCAGTGAATGTCACACCCCAACAACAGAAGCATAAGAGAACAACAGGTACAACAGTGCTTGTATCAAGTATGGGAGGTGTTGTTGGAGTGCTGATTGTTGGTGTGGTTATCTTGGTTGTTAGCCAGGTTCATAAAAAACATGTTGTGAAAACACCTTCAAAGTCCACATTGGAGAATGTTATTAGTCAGGCACAGAATGAGGATGAAGTGAAAACTCCTAAAAGGTCCATAATGGAGCATATCATCAGCAGGGTTCCTGACAAACATGCTGTGAAAACACTATCAAGATCTATAAAGGAGCAAGTCATGAGCCGAGTGAATAACAAACGTATTGTGAAGACTCCTACAAGGTCCATAATAGAGCATGTATCATCAGTTAACACTGCAAAACTACTCACTGATGCAAGATATATATCTCAAACAATGAAGATGGGAGCTAGCTTTCCTGCTTATAGGACCTTTCCTTTGGACGAACTTAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGTCCACATGGTCAGATATACAAAGGGGTGCTCTCTGATGGAATGCATATTGCTATTAGAGGCATGAAAATAAGAAAGAAACACAGCCCTCAGACCTATATGCACCATGTTGAGTTGATTTCAAAACTCAGGCATTCACACTTGGTTAGTGCTCTTGGGCATTCTTTTGAGTGCAACCAGGATGATTCAAATGTCAACACTATCTATCTCATATTTGAGTTTGTTCCAAACAAAAGTTTAAGAAGCTGTGTCTCTGGATCTTCTGGAGAAAAGCTTTCTTGGACACAAAGAATAGCAGCTGCAATTGGAGTGGTGAAAAGCATTCAGTTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTAAAGATAACAGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTGCCACTCTATGCTGAAAACAAAAGAATGGTCAACAATGGAACTTCCCCTGGATTAAAAGGAAATCTCCAAGCAAGGATAAAGGATGCAGACAAGCATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGTACACTAAAAGATCTTGTAAGTATCAAGACTGATGATATAGCTAGAAGGAGTATTGTTGACCCAGTAATTCATAAGGAATGCTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAACTAATAGGCCTTCTGTGGAAGATGTTCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATACATGGAAAAGAGACTCAAATGATAATAGAGACTCGCCTGCACCATCCTCCAGGGAGACATAA 2496 0.3966 MANPVSHSYLLLLILFLTIHLSEELQFSQYQTLLKVQQLLGYPSALGSYSSNTDNCNIEPTPSLTLVCYEDSLTQLHVVGNKGFTSLPQNFSSDTLFATLGSLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNYFNGAIPVQVSHLKNLQSVVLDDNNFNGEIPNWVGSLQGLAVLSLKNNWFSGNLPTSVKSLVTLRVLDLSNNQLSGELPNLHNLSNLQVLHLENNTFGPHFPSLPTKLVSLVLRNNSFKLSVPSNISSFYQLQKLDLSFNGFVGPFPPSLLSLPSLNYLDISSNKFTGLLFKNFSCNDDLHFVNLSSNLLKGELPTCLRPKTRVVLYTRNCLSNENQDQLPSTFCSNEALAVNVTPQQQKHKRTTGTTVLVSSMGGVVGVLIVGVVILVVSQVHKKHVVKTPSKSTLENVISQAQNEDEVKTPKRSIMEHIISRVPDKHAVKTLSRSIKEQVMSRVNNKRIVKTPTRSIIEHVSSVNTAKLLTDARYISQTMKMGASFPAYRTFPLDELKEATNNFDASCFISEGPHGQIYKGVLSDGMHIAIRGMKIRKKHSPQTYMHHVELISKLRHSHLVSALGHSFECNQDDSNVNTIYLIFEFVPNKSLRSCVSGSSGEKLSWTQRIAAAIGVVKSIQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPLYAENKRMVNNGTSPGLKGNLQARIKDADKHDVYDIGVILLEIILGRPIMFHNEVGTLKDLVSIKTDDIARRSIVDPVIHKECSDESLMTMMEICVRCLSSEPTNRPSVEDVLWNLQFAAQVQNTWKRDSNDNRDSPAPSSRET 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi192g00048 831 Gene3D Ribonuclease Inhibitor 242 371 IPR032675 -
Sebi192g00048 831 Pfam Protein kinase domain 541 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi192g00048 831 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 244 368 - -
Sebi192g00048 831 FunFam Leucine-rich repeat receptor protein kinase EMS1 144 242 - -
Sebi192g00048 831 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 104 820 - -
Sebi192g00048 831 Gene3D Ribonuclease Inhibitor 149 241 IPR032675 -
Sebi192g00048 831 Gene3D Transferase(Phosphotransferase) domain 1 617 825 - -
Sebi192g00048 831 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Sebi192g00048 831 ProSiteProfiles Protein kinase domain profile. 534 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi192g00048 831 Gene3D Phosphorylase Kinase; domain 1 494 616 - -
Sebi192g00048 831 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 617 819 - -
Sebi192g00048 831 PRINTS Leucine-rich repeat signature 202 215 - -
Sebi192g00048 831 PRINTS Leucine-rich repeat signature 291 304 - -
Sebi192g00048 831 Gene3D Ribonuclease Inhibitor 28 148 IPR032675 -
Sebi192g00048 831 SUPERFAMILY RNI-like 72 340 - -
Sebi192g00048 831 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 508 616 - -
Sebi192g00048 831 Pfam Leucine Rich repeats (2 copies) 201 233 IPR025875 -
Sebi192g00048 831 SUPERFAMILY Protein kinase-like (PK-like) 513 805 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi192g00048 Sebi-Chr192 1220465 1224813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi192g00048 42 828 Miscellaneous Gene Families AT3G03770 42.375 1.39e-172 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Sebi192g00048 Pkinase 1.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi192g00048 - - lja:Lj0g3v0004239.1 1306.97