Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi192g00039 ATGCCAAATCGAAGAGGCTACATCGACAGCGGTAGGATAACTCTAGCCTCCACAGCCATTGCCTTGGTGGAAGAGGGAGGATGGGGTCGGGGGCGTGTCTTTGGCATTAAAGGAACTGTTGGTAGTGCTTGCATGTTCATTGCGGACTGGAGGTGCGCAACACGGTTGGTGCACGGGAGAGAAGGCAGATCGAGCAGCCACCGTATAGCAAATATCAAGGTCTGGGTCACTGGTAGTTTGAACAATCATGAGTCTCTTTTGAAGGATTTCGAAGTAGAGTCAAAGAATCCATCTGAAGAGGCGCTGAGACGTTGGAGATCGAGCGCAGCAGCGTTTGTGAAGAATCGCCGGAGAAGGTTCCGCTATGCCGCGGATCTCGAAAAACGTGCCGAAGCGGAAGAAATCAAGGAAAAGATTCAGATTGCTCTATATGTTCAGAAAGCAGCTTTGCAATATATTGAATCTGAGTCTGGTAAACTTGAATATGAGAATCATGCCACATCTGATCTTCCAGCTGGTTTTGGCATTGATCCAGATTCGATTGCATCTCTTGTTCGGTTCTGTGATAACAACAGGTTGAAAGAAATTGATGGAGTTGAAGGGGTTGCGAGGAATCTCCATATCTCAGTGGTAGATGGTATTAGTGAAGACAGCATAAATACCCGGCAAAACTATTACGGGTTTAACCGCTATGCAGAAAAGCATTCTAAAACTTTTCTTATGTTTATGTGGGAATCACTGCAGGACTCAACACTCATTATTCTCATGGTTTCTTCCATAGTTTTAATAGGTGTAAGAGTTGCCACCGAAGGGTGGCTGGTGAGTTTGTATGATGAGGTGGGAATTATACTTGGTGTATTCTTGGTAATCATCTTTACCACTGTCAATGACTACCAGCAATCATTGAAGTTCAGGGAATGGGACAAAGAGAACAAAAACATTTTTGTTGAGGTCACCAGAGATGGGAAAAGACAGAAGATATCAATTTATGACCTGGTGGTAGGAGACATTGTTCATTTGTCAATTGGGGGTCAAATTCCTGCTGACGGTATTTACATATCGGGATACAATTTACAGATCGATGAATCAAGTTTAACAGGTCAGATTGAAACAGTTCATGTAAATGAAGAAAAGCCTTTTCTCCTTGCAGGAACCAAAGTGCAAGGTGGGTCAGGGAAGATGATAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTGGAAGTTCTGAATGAGGGAGGAGTGGAGGAAACCCCGTTGCAGGTGAAATTGAATGGGGTTGCCACAATCGTTGGTAAGGTTGGCTTGAGTTTTGCTCTGCTGACATTCGTGGTGTTGATGATAAGGTTTCTGGTGGAAAAAGCACTTAATGGTGAGTTTACTAATTGGTCATCAAAAGATGTGATCAAGCTGTTGAACTACTTTACTTTAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAATTTAATGAGTGATAAGGTACTAGTGAGGCATCTTTCTGTATGTGAGGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACGTTGACCACTAACCACATGGTGGTTGATAAAATATGGATATCTGGAGAAGTTGTGAAGATGAAAGGTAAGAAGAGTGGAGACAAACTGAAAACAAAGATATCTGAAGGAGCTCTAAACATACTTCTGCAGGCTATATTTCAAAATAATGCTTCTGAAATGGTTCAGGATAAACATGGAAAGATCACAATACTGGGAACACCAACAGATTCAGCATTATTGAAACTTGGCTTGCTTTTGGAGGGTGATTTTGATGTCCAATGCAGATTGTATGAGAAACTAAAGGTTGAGCCTTTTAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGCCTTCCTGATGGAGGAGTAAGAGCTTTCTGCAAGGGTGCTTCAGAAATAATATTAAAAATGTGTGACAAAATCATTGATTGCAATGGAATACCTGTTGATTTCTGTGAAGACTATGCAAACAATGTCTCTGATGTTATAAATGCTTTTGGCTCTAAGACTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGTAACCCCTGGTGAAGCTGACATCCCTGATAATGGCTATACACTGATAGCAGTTGTAGGAATCAGAGATCCTGTGCGCCCTGGGGTCAAAGATGTTGTTCAAAATTGTTTAGCAGCTGGGGTGACCGTTGCTATGATCACTGGTGATGATATAAATATAGCTAGGGCTATTGCTACAGAATGTGGTATACTAAAAAATGGTGGTGTAGCAATAGAAGGACCAGAATTTCGTAATTTGTCTACAAGGCAAATGAAGGTTATGGTACCAAGAATTCAGGTAATGGCACGGGTCCTACCACTTGACAAACACTCCTTTGTAGCTAATCTAAAGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAGTGATGCTCCTGCACTGCATGAGGCAGACATCGGAGTTGCCATGGGATTAACAGGAACCGAGTTAACAGTCATTATTGTTGCTCTGGTGATCAACTTTGTTTCAGCATCTATAGCAGGATATGTCCTCCTAACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACATTCTGTGCGCATTAGCCATGGTCACTGAGCCACTTAATGATGGACTTATAAAAAGGCCCCCAGTTGGAAGGAGAGAAAATTTTATCACCAAAGCCATGTGGAGGAATATCATTGGCCAAAGCATATTTCAAGTAATTGTCCTTACCCTTCTCAATTTTGAAGGGAAGGATATACTGAGCATAAGTGGTTCAGATGCAACTGATGTACTCAGAACTTTGATATTCAACTCCTTTGTGTTTTTCCAGGTGTTCAATGAGATAAACTGCCGAGAGATAGAAAAGATAAACATTTTCAAAGGCATTCTTGACAGCTGGACATTTTTGGTAATAATTTTCTCAACAGTGGTAATTCAGGTAATCATAGTGCAGTTCCTCGGAACTTTTGCCTGCACGGTGCCTCTAAACTTGGAACTCTGGTTACTTAGTGTTTTAATTGGTGCCACTAGCATGCTTATAGCTTCTCTTCTGAAGTGCATCCCAGTGAAAAGAGATGTGGCTATTCACCATGAGGGTTATGAGGCACTGCCTCCACATCCCTAG 3216 0.4192 MPNRRGYIDSGRITLASTAIALVEEGGWGRGRVFGIKGTVGSACMFIADWRCATRLVHGREGRSSSHRIANIKVWVTGSLNNHESLLKDFEVESKNPSEEALRRWRSSAAAFVKNRRRRFRYAADLEKRAEAEEIKEKIQIALYVQKAALQYIESESGKLEYENHATSDLPAGFGIDPDSIASLVRFCDNNRLKEIDGVEGVARNLHISVVDGISEDSINTRQNYYGFNRYAEKHSKTFLMFMWESLQDSTLIILMVSSIVLIGVRVATEGWLVSLYDEVGIILGVFLVIIFTTVNDYQQSLKFREWDKENKNIFVEVTRDGKRQKISIYDLVVGDIVHLSIGGQIPADGIYISGYNLQIDESSLTGQIETVHVNEEKPFLLAGTKVQGGSGKMIVTTVGMRTEWGKLVEVLNEGGVEETPLQVKLNGVATIVGKVGLSFALLTFVVLMIRFLVEKALNGEFTNWSSKDVIKLLNYFTLVVTMIVIAVPEGLPLAVTLNLAFATKNLMSDKVLVRHLSVCEAMGSASYICLDKTGTLTTNHMVVDKIWISGEVVKMKGKKSGDKLKTKISEGALNILLQAIFQNNASEMVQDKHGKITILGTPTDSALLKLGLLLEGDFDVQCRLYEKLKVEPFNPVQKKMTVLVSLPDGGVRAFCKGASEIILKMCDKIIDCNGIPVDFCEDYANNVSDVINAFGSKTLRTLCLAVKDINVTPGEADIPDNGYTLIAVVGIRDPVRPGVKDVVQNCLAAGVTVAMITGDDINIARAIATECGILKNGGVAIEGPEFRNLSTRQMKVMVPRIQVMARVLPLDKHSFVANLKNMFGEVVAVTGDGTSDAPALHEADIGVAMGLTGTELTVIIVALVINFVSASIAGYVLLTAVQLLWVNLIMDILCALAMVTEPLNDGLIKRPPVGRRENFITKAMWRNIIGQSIFQVIVLTLLNFEGKDILSISGSDATDVLRTLIFNSFVFFQVFNEINCREIEKINIFKGILDSWTFLVIIFSTVVIQVIIVQFLGTFACTVPLNLELWLLSVLIGATSMLIASLLKCIPVKRDVAIHHEGYEALPPHP 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi192g00039 1071 Gene3D - 213 413 - -
Sebi192g00039 1071 SUPERFAMILY HAD-like 518 857 IPR036412 -
Sebi192g00039 1071 Gene3D - 859 1058 - -
Sebi192g00039 1071 FunFam Calcium-transporting ATPase 97 154 - -
Sebi192g00039 1071 SUPERFAMILY Calcium ATPase, transmembrane domain M 198 1054 IPR023298 -
Sebi192g00039 1071 Gene3D - 527 858 IPR023214 -
Sebi192g00039 1071 ProSitePatterns E1-E2 ATPases phosphorylation site. 532 538 IPR018303 -
Sebi192g00039 1071 SUPERFAMILY Calcium ATPase, transduction domain A 314 410 IPR008250 -
Sebi192g00039 1071 Pfam Cation transporting ATPase, C-terminus 878 1050 IPR006068 -
Sebi192g00039 1071 Pfam Ca2+-ATPase N terminal autoinhibitory domain 87 131 IPR024750 GO:0005516
Sebi192g00039 1071 Gene3D - 245 526 - -
Sebi192g00039 1071 Pfam Cation transport ATPase (P-type) 585 670 - -
Sebi192g00039 1071 NCBIfam calcium-translocating P-type ATPase, PMCA-type 193 857 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi192g00039 1071 Pfam E1-E2 ATPase 316 508 - -
Sebi192g00039 1071 Gene3D - 97 154 - -
Sebi192g00039 1071 PRINTS P-type cation-transporting ATPase superfamily signature 728 739 - -
Sebi192g00039 1071 PRINTS P-type cation-transporting ATPase superfamily signature 530 544 - -
Sebi192g00039 1071 PRINTS P-type cation-transporting ATPase superfamily signature 831 850 - -
Sebi192g00039 1071 PRINTS P-type cation-transporting ATPase superfamily signature 750 760 - -
Sebi192g00039 1071 PRINTS P-type cation-transporting ATPase superfamily signature 361 375 - -
Sebi192g00039 1071 SFLD p-type atpase 512 859 IPR044492 -
Sebi192g00039 1071 Gene3D - 540 735 IPR023299 GO:0000166
Sebi192g00039 1071 SFLD Haloacid Dehalogenase 512 859 - -
Sebi192g00039 1071 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 536 740 IPR023299 GO:0000166
Sebi192g00039 1071 Pfam Cation transporter/ATPase, N-terminus 198 261 IPR004014 -
Sebi192g00039 1071 PRINTS Sodium/potassium-transporting ATPase signature 654 672 - -
Sebi192g00039 1071 PRINTS Sodium/potassium-transporting ATPase signature 523 544 - -
Sebi192g00039 1071 FunFam Calcium-transporting ATPase 292 413 - -
Sebi192g00039 1071 FunFam Calcium-transporting ATPase 540 735 - -
Sebi192g00039 1071 PANTHER CATION TRANSPORTING ATPASE 162 857 - -
Sebi192g00039 1071 NCBIfam HAD-IC family P-type ATPase 282 552 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi192g00039 Sebi-Chr192 1105858 1115642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi192g00039 135 1071 Primary Pumps ATPases AT3G57330 58.547 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi192g00039 K01537 - gmx:100783489 1273.07