Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi192g00006 ATGGACACGTCATCACCGGTGTCAGAGAGCTCTCCGAGGGCGATATTTTCCTACGAGGAGTTGCTGCTGGCGGCGAGCCACCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAGGGAGACTCGCCACCCAGTGTATAGGGGTGTGAGGAGGAGGAACTCCAATAAATGGGTGTGTGAAATGAGAGAGCCCAATAAGAAGACCAGGATTTGGCTAGGGACTTTTCCAACGCCAGAAATGGCGGCGCGGGCTCATGATGTGGCCGCGATGGCGCTGAGAGGCCGCTACGCCTGTCTTAATTTTGCCGACTCGGCATGGCGGCTCCCCATTCCCGCCACCGCCGACCCCAAGGATATACAAAAGGCAGCTGCAGAGGCTGCTGAAACTTTCAAGCCAAGTCTGACTTTAAATACTAATGACACAAGCCATGATAGTGTCCCTCCACCGCCGGCAGTGGCGGCGGAGGAACAAAGTGTGTTCTTTATGGAGGAGGAGTTGGGGATGCCGGAGTTGTTGAGGAATATGGTGCTTATGTCCCCAACACATTGTTTGGGGTATGAGTATGAAGATGCTGACTTGGACGTTCAGGATGCTGAGGTGTCACTATGGAGTTTTTCAATTTAA 621 0.533 MDTSSPVSESSPRAIFSYEELLLAASHPKKRAGRKKFRETRHPVYRGVRRRNSNKWVCEMREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSAWRLPIPATADPKDIQKAAAEAAETFKPSLTLNTNDTSHDSVPPPPAVAAEEQSVFFMEEELGMPELLRNMVLMSPTHCLGYEYEDADLDVQDAEVSLWSFSI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi192g00006 206 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Sebi192g00006 206 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Sebi192g00006 206 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Sebi192g00006 206 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Sebi192g00006 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 204 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi192g00006 Sebi-Chr192 339831 340451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi192g00006 2 204 AP2-EREBP Transcription Factor Family AT5G51990 57.339 1.34e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi192g00006 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi192g00006 - - gmx:547622 320.857