LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi192g00002	ATGTCTGCGGACAAAAGAAAGTGTGTCAGGTCCAGCAGCTTGAAAAATGGTGCAGCACTTTATATTCTGAAACCCTTTTGTGGAGATGACTTCAAAGACATTTGGAAGTATGCAGCGGCTGCAAGGAAAGGGAAACTAGTGATTGAAAATGAATTGAGAAGCAGAGAAGGGGCGGTGCCAAAGAAAATTCTCGAGATCATGAATGTACCATACTTGACCAGAGAAAATGTTGCCAATCACTTACAGCAATATTTGAAAAGATTGTCATATCAAGCAGGAAACAGAACAATAACCTCTACTCTTAATCCTTTCAACTATGGTCCAATGAGTCTTTCTGATCAACAAGTTTCAAGCAACAATTATGTGACTACTCAACTTGGGACAGGTCAATTCCCCTATCCATTGCACAATGGCCTGATGCTTCAAAACCAGCATGGTAGTTCTTTGAAAGTCAGACTTGGACAATCAAGCTTTGGAAGCCATAATATTGGGACTAATAATATTATTGGACAATCAAGCTATGCAAAACCACCATATCAAGCAAATAGCTCATACAATTCTGGTGCTATCTTTCCACCATATGGAGGTGGACATGGTTTGATGACATCTGCTAATGGCCTAATAGGAGGTTACCAAAACTATGGTTCAATGGGAAATCACAACTTTAGCTATGATCCAGGAAACTGGAACATGGGAAATTTGAGCAGCTCTAATGTCCTGCCTCAGACTTCTACTTATTATAACTCTGGAATTCAACAGAATGATGGATCACAAATGGTAGGGACTGGGATAAAAGGAGGGATTAACAATGTTGGTACTACAAACAACAATAGCTTTGACTTTAACAATGTTAATACTGCATACAACAATAGCTTTGGCTTTAACAATGTTGGTAATGCAAACAATGGCTTTGGCTTCATCAATGGGAAACAAAATGCAAACATGAATGTGTCATCCTTGGGGAATGGAGATGTTGGTTTAGTTCAAGGACAGTTTGCTTTTCCTTCCTCTGCATCTAATGTTGGGGATGTGTGTGCAAGTGAGCTTCCACCACCAGCATTGATCACTGATGGAACACTAGAAGAAAATGTTTCAGGGCTCCCACCATTGCCTCAGCAACTAGATGACATTGTTGTAGAAAATGAGCATCAGAATAATAATGTCACTTCAATCAGTGAGAGTGAGGCCAGCCAACTGAACTATGACCTTTCTGACATAGATGGATCTTCTTAA	1233	0.3982	MSADKRKCVRSSSLKNGAALYILKPFCGDDFKDIWKYAAAARKGKLVIENELRSREGAVPKKILEIMNVPYLTRENVANHLQQYLKRLSYQAGNRTITSTLNPFNYGPMSLSDQQVSSNNYVTTQLGTGQFPYPLHNGLMLQNQHGSSLKVRLGQSSFGSHNIGTNNIIGQSSYAKPPYQANSSYNSGAIFPPYGGGHGLMTSANGLIGGYQNYGSMGNHNFSYDPGNWNMGNLSSSNVLPQTSTYYNSGIQQNDGSQMVGTGIKGGINNVGTTNNNSFDFNNVNTAYNNSFGFNNVGNANNGFGFINGKQNANMNVSSLGNGDVGLVQGQFAFPSSASNVGDVCASELPPPALITDGTLEENVSGLPPLPQQLDDIVVENEHQNNNVTSISESEASQLNYDLSDIDGSS	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi192g00002	410	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	56	312	IPR044841	GO:0003700\|GO:0006355
	Sebi192g00002	410	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	56	86	IPR006447	GO:0003677
	Sebi192g00002	410	SUPERFAMILY	Homeodomain-like	52	88	IPR009057	-
	Sebi192g00002	410	Gene3D	-	36	90	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi192g00002	Sebi-Chr192	101355	103640	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi192g00002	28	88	Response Regulator Gene Family	AT3G16857	50.000	3.86e-09	56.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Sebi192g00002		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi192g00002	-		-	aprc:113866677	218.779