Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi191g00040 ATGACTCTTTTTTATTCCGTGGCTGAATTGAATCAAGCAAGGACGATTGAAAGTTCTTATCAGTTCTCCAAACAAAATCCAATTGAAAAAATGTCCACTGATAAGGCTGGAAGCTCGAGACAAAATAGGAGGGTTGATCGTTTCGTAGCTAAGTTGACCCCTAATGAGGATATGGTGTTTATAGAGAATAAATTTTGGTTGAAGTTTCAAGGTGAAATTAGGGGTCGAAATGTTATCCTAATGGACCCTGCTGGGTTTACTTTTAATGTGTCTGTAGAGTTCCATGGGTATAATGAGGTTGGAATTATGACTGGAGTTGAAAACATTGTTACTCGCTATAACTTGGTTAAGAGTTACTGGGTGTTATTTACATATAAAGGGAATTGTGAGTTTGACATTAGAGTAGTGAATGGAAATGTGGAGGTCAATTATCCTAGGGTTGAAACTGATGAAGATGTTGATGTCCAACCTGTGGAGTATGAGGAGGACCCTGAGGAGCCCCTATTTATGTGGGAAGTTACTTTGACAAAGGCTGCTGCATCCGGTGCTAACGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATATTGGACAATAATCAGGAAGTTGTGACTGTTATAGATGAGGGTGGTGAATTAATTCCATGCAAGGTTCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCAGTGGGTGGTATGAGTTTATTCGGGGAAAGAAATTGAAGGTTGGGGATAAGATAAGATTTTACTCAGATGATAGTATGGAATCTTTGTCTGCGGTTGTAGAACGCATTTGA 804 0.4017 MTLFYSVAELNQARTIESSYQFSKQNPIEKMSTDKAGSSRQNRRVDRFVAKLTPNEDMVFIENKFWLKFQGEIRGRNVILMDPAGFTFNVSVEFHGYNEVGIMTGVENIVTRYNLVKSYWVLFTYKGNCEFDIRVVNGNVEVNYPRVETDEDVDVQPVEYEEDPEEPLFMWEVTLTKAAASGANALLIPARIVRDILDNNQEVVTVIDEGGELIPCKVLKPKRRPSERYLSSGWYEFIRGKKLKVGDKIRFYSDDSMESLSAVVERI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi191g00040 267 SMART B3_2 48 139 IPR003340 GO:0003677
Sebi191g00040 267 SMART B3_2 171 266 IPR003340 GO:0003677
Sebi191g00040 267 Pfam B3 DNA binding domain 172 259 IPR003340 GO:0003677
Sebi191g00040 267 SUPERFAMILY DNA-binding pseudobarrel domain 167 259 IPR015300 -
Sebi191g00040 267 ProSiteProfiles B3 DNA-binding domain profile. 171 267 IPR003340 GO:0003677
Sebi191g00040 267 SUPERFAMILY DNA-binding pseudobarrel domain 47 137 IPR015300 -
Sebi191g00040 267 CDD B3_DNA 167 256 IPR003340 GO:0003677
Sebi191g00040 267 Gene3D - 156 265 IPR015300 -
Sebi191g00040 267 Gene3D - 39 140 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi191g00040 Sebi-Chr191 759168 760509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi191g00040 12 153 B3 DNA Binding Superfamily AT4G01580 24.324 8.10e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi191g00040 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi191g00040 - K12388 vvo:131611573 64.3142