Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00117 ATGGCGACATCAGAGGTATCAATCAAGGGAAATTCGGTGAACGGAAAAGGAGAAAATAACAACAACGATGCTAGGAACGGTGCAGCAGAGGGTCAAAATGGTCCTTCATCGTCAACAGCGAGAGACGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTAACAGTTCCCAGAGAAGGAGAGCGCGTGTTCTATTTTCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTAGCGGAACAGCACATGCCAGTTTACGATCTTCCACCTAAGATCCTTTGTCGGGTCATCAACGTGATGCTGAAGGCTGAGCCAGATACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTCCACCGGCTCCGCCACCACGATTTCATGATATGTCAAAGCAACCACCTACCCAGGAATTGGTGGCCAAAGATCTGCATGCGAACGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCACGGAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTGGTAGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCATCGTCGGTCATCTCTAGCCACAGTATGCATCTCGGTGTCCTGGCAACTGCTTGGCATGCTATATTGACCGGGACCATGTTTACTGTTTATTACAAGCCTAGGACCAGTCCAGCTGAATTTATTGTTCCATGTGATCAATACATGGAGTCTCTAAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCTCCTGAGCAAAGGTTTACTGGCACCATTGTTGGAATTGAAGATGCTGACCCCAAAAGATGGCCGAAATCTAAATGGAGAAATCTGAAGGTGAGATGGGATGAAACATCTAACATACCTCGGCCTGAGAGAGTTTCCCCATGGAAAATAGAGCATGCTCTTGCTCCTCCAGCTCTAAATCCTCTTCCTATGCCTAGGGCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCAACATCTAAAGTAAGCATAGACCCTTTGCCAGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAACTGTCGACCTTGAGAGGTAATTTTACAGAAAGCAATGAGTCTGATAATGCAGAGAAGTCTGTTGTGTGGCAACCTGCAACAGATGATGAAAAGATTGATGCTGTTTCTGCTTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGCAAGGCATGAGCCAACGTATTCAGATCTTCTTTCAGGCTTTGGAGCCCATGGAGATCATTCTTCCCATCCATCCTTTGTTGAACAGACTGGTCCTGTAGCTATCCCTGGTAGGAAAAGTTTGTTGGATCGTGAAGGCAAACATAATGTGCTTAGTCCATGGCCTGTAATGCCGTCTAGTCTATCACTCAACCTCTTGGACTCTAATACAAAAGGTTCTGCACTAGGTGGTGACACAACTTATCAAGTTCAAGGGAATTTGAGGTATAGTGCATTTGGTGAATACTCTCTGCTTCATGGACATAAAGTTGAACATCCACATGGAAACTTTATGATGCCGCCACCACCTCCAAATCAATATGAGAGTCCTCATTCAAGAGAACTGTTGCCCAAACAAATATCAGCAAGAACTTGTGAGGTTGCAAAACCAAAAGATGGTGACTGTAAATTATTCGGCATCTCACTTCTCAGTAGCCCCATTGCACCAGGGCCATCTATGTCACAAAGAAATGTTGCAACTGAGCCAGTTAGTCACATGAATCTTACATCACAACATCAGACATTTGAAAATGATCACAAGTCACTGGCAGATGGTCCAGTTGTAGTTGATGACCATGAGAAGCTGTTACCGACTTCTCAGCCTCATCTTAAAGATGTTCAACTCAAACCTCATAATGGTTCTGCCAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCAGTGGACCTTACAAAGTTCAATGACTATGATGAATTAATTGCTGAATTGGATCAGCTCTTTGAATTTGGAGGTGAACTAAAATCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGAACCTTAAGTTCAAAAAATGAAGAGAATCAGTCAGTTAGCGAAGGTGCAGATGCACAAGAATTACCTGAAGAAGCGAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAGAAGGCTGGAGAGCTGCGAGACAAAGAAATGGATCTTAAGGCACAGATCTCAGCACTTGTAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCGGGAGATGAAGGTCCAGTTGTGACTGAAGTTGTCATACAGCATATTGTCTCTTCCTGGACTGGTATTCCCGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAACTTTATCTTGTCCGGGCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCACTGGCTGCATACTACTTTGGTTCTGAAGAGGCCATGATTCAGCTTGACATGAGTGAGTTTATGGAAAGGCACGCCGTGTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGACAGTTCGGCGTCGTTCCTACACTGTTATATTGGAAGATGGAAGGCTAACAGACAGTAAGGGAAGAACTGTGGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGTCGTCGGATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTGTAATAGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAAAGTTTAGGCTAG 3138 0.4544 MATSEVSIKGNSVNGKGENNNNDARNGAAEGQNGPSSSTARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPAPPPRFHDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPCDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRNLKVRWDETSNIPRPERVSPWKIEHALAPPALNPLPMPRAKRPRSNVVPSSPDSSVLTREATSKVSIDPLPASGFPRVLQGQELSTLRGNFTESNESDNAEKSVVWQPATDDEKIDAVSASRRYGSESWMSMARHEPTYSDLLSGFGAHGDHSSHPSFVEQTGPVAIPGRKSLLDREGKHNVLSPWPVMPSSLSLNLLDSNTKGSALGGDTTYQVQGNLRYSAFGEYSLLHGHKVEHPHGNFMMPPPPPNQYESPHSRELLPKQISARTCEVAKPKDGDCKLFGISLLSSPIAPGPSMSQRNVATEPVSHMNLTSQHQTFENDHKSLADGPVVVDDHEKLLPTSQPHLKDVQLKPHNGSARSCTKVHKKGIALGRSVDLTKFNDYDELIAELDQLFEFGGELKSPQKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSVSEGADAQELPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAESEAGDEGPVVTEVVIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHNFILSGPTGVGKSELAKALAAYYFGSEEAMIQLDMSEFMERHAVSKLIGSPPGYVGYTEGGQLTETVRRRSYTVILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSCNRIKSLVTEELKQSLG 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00117 1045 CDD B3_DNA 155 220 IPR003340 GO:0003677
Sebi190g00117 1045 ProSiteProfiles UVR domain profile. 806 841 IPR001943 GO:0005515
Sebi190g00117 1045 Pfam UvrB/uvrC motif 806 841 IPR001943 GO:0005515
Sebi190g00117 1045 SUPERFAMILY DNA-binding pseudobarrel domain 146 249 IPR015300 -
Sebi190g00117 1045 MobiDBLite consensus disorder prediction 776 804 - -
Sebi190g00117 1045 Coils Coil 795 822 - -
Sebi190g00117 1045 CDD RecA-like_ClpB_Hsp104-like 903 1004 - -
Sebi190g00117 1045 Gene3D - 863 1045 IPR027417 -
Sebi190g00117 1045 MobiDBLite consensus disorder prediction 776 793 - -
Sebi190g00117 1045 SUPERFAMILY CAD & PB1 domains 688 763 - -
Sebi190g00117 1045 Gene3D - 283 353 - -
Sebi190g00117 1045 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 150 775 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi190g00117 1045 Gene3D UVR domain 799 855 - -
Sebi190g00117 1045 Gene3D - 115 222 IPR015300 -
Sebi190g00117 1045 MobiDBLite consensus disorder prediction 1 41 - -
Sebi190g00117 1045 FunFam Auxin response factor 283 355 - -
Sebi190g00117 1045 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 949 967 IPR001270 GO:0005524
Sebi190g00117 1045 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 904 922 IPR001270 GO:0005524
Sebi190g00117 1045 ProSiteProfiles PB1 domain profile. 686 768 IPR000270 GO:0005515
Sebi190g00117 1045 FunFam Auxin response factor 681 775 - -
Sebi190g00117 1045 Gene3D - 682 775 - -
Sebi190g00117 1045 Pfam Auxin response factor 246 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi190g00117 1045 MobiDBLite consensus disorder prediction 357 385 - -
Sebi190g00117 1045 SMART B3_2 120 222 IPR003340 GO:0003677
Sebi190g00117 1045 Pfam B3 DNA binding domain 147 221 IPR003340 GO:0003677
Sebi190g00117 1045 Pfam AUX/IAA family 732 773 IPR033389 -
Sebi190g00117 1045 ProSiteProfiles B3 DNA-binding domain profile. 145 222 IPR003340 GO:0003677
Sebi190g00117 1045 MobiDBLite consensus disorder prediction 1 40 - -
Sebi190g00117 1045 Pfam AAA domain (Cdc48 subfamily) 977 1042 IPR003959 GO:0005524|GO:0016887
Sebi190g00117 1045 Pfam AAA domain (Cdc48 subfamily) 902 963 IPR003959 GO:0005524|GO:0016887
Sebi190g00117 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1008 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00117 Sebi-Chr190 1502890 1508515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00117 1 797 B3 DNA Binding Superfamily AT5G62000 62.021 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi190g00117 Auxin_resp 4.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00117 - - gmx:100815956 1307.35