Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00116 ATGTGGGAGTGGACATTGCAGGACCAAGAAAAGGAATTGGAACTGGAAAGTGACGAGGGTGAGGGTGAGGCTGAGATTGAGGTTCCATTGCCTCTCACCGTTACTTCTCGGGTTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCCAATTATCGCTCTTCTGGCTTCCCTCGCCGCCTTTCCACCACCATGCCTTCTACTTCTAGCATCAAAGAATCGATTGAGGAGCCAAAATGGGGCCTGCACCCTGATCAAACAGAAATTAGCCTGTGGGAGAGGCTTGGGAATGCTGCAATGTTGGATATTGAATCAAGCTCATTTTCTTGGGACATGCTCTCTTCACTTCACCACACTGAACACAGCAGTAGCAATGAACATTCTGAGGATGAAATGAACAAAGCTCTTGAGGTAACTGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATTGCCTGGGGAGTGCTGAAGCTTCTCCACTAGAAGCAGCAGCTGTTATAAAGATATCATCATCAAGAATGGCAACACAATCTGAACGCCTGGGCTACGAATTCGCCAAGTGGATGGGAATCCAAACTCCACAGGCTAGAGTAATTCACAATACCAGTTCAGAATGGCAACAAATAAAGGAAGCTGCAGAAAGAGCTAGAGACGCAGCAAATTTTGAGGGTGATGAAATTGGCGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGCTATGTACATGGTTCACCTTTGCTTGAAAACTCTAGTGCATTTGAGTCACGGGATTCTGCAGAAAGAACAGCAGAAGCTCTTGGTAGGGTACTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGTTGATCTCTGCAAATACATATACACTAGAAGCAGCTTTTGATTCTGCAATTAATCGATATAGACCAAAGGTGATTAGGGCACTTCAAAAAGAAAGAAGGTCAACTTCAGTAGATAGCAGATTAAATTCTCATAATCCTGGCTTGATATCACAAGCCTCTGATCTTTCAGAGATTGCAGAATCACCAAGATCCACTGACACTAGCCTTAAAAGTCAAACATCAGGAGAAGCACTGTCTTCTGACCTTAACATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGGTTGAGTTGCTGATCAATAGTTCTGAGTATGCCTCAAACCTCTTATATGATATAACTGGAGGGAAATTAGGATTTCCTCCACCAGAAGACATGGATACAACTGATGTACATGCAAGTGATATCACATCAATAGTTCATGCATTCCGTACTGGTTTCCGTGCTGCTCTTAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTAAGATCATTTTTGAACATCATAAGCAAAATATCTTCAGGGGAATCTGACAAAGAGGATTCATTGGTTCCTGACTCACCTTCACTGGCTGCTGGTGGTAGTTGTTACTCTCCAACAAGTAAGGAGAGGCTTGCTAATGATAACCATCAAGACTTTACTGATTCAGAATCACAGAGAACTGCTTCAAAAGCATCCTCTTCAAGTAATAGAGATGGCTGTGACTCTACTCCTATGTCAAGAGAAAGTTGGCATGGAAAGTTCTATAAAGGAAATGGGGAGCCGCTTCGAAATCTCCGCTTAACAGCTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCTAATAAGGAAATGGAACAGTGGAATGAAATGCTTAAAAATGATGCGATCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTCAAGGTCAGACTTGAGCATATACTTGAGAGAATTGCACTGATATCTGAGGCTGCAAGTACAGAGAGACCATCAGCTGTTACAAGTACTCTATTCATCGGTGGAGCTCTGGCTGCAAGATCTGTATACACACTGCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACCAATGAAATTGGACAATCTGAATCTCAGTTTCCTGATCTATTTGAGTACAAAAATTTCTCTGTGTGTGACAGTGAAGATTATAACATCAGCTGTATATTTGAAGAAGCGTGTGATTTTATAGATCATGTTGAACAAACAGGTCAGAAAGTTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGCTACGTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTACACTTTATTAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACAGGAACTGGATCAGAAACTACATGGGAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAACTATGAAAATTTGCCCTATCTGTGGCAAAAACGCTGGACTAAGCAGCAGCTCACTTAAGTTGCATCTGCAGAAATCACATAGAAAGCTATCATCTGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAGAAGGCATTAACTGCTTTGAAGATTAGCCGTGGTGGTAGTGTTAGCCCCACACAGAGGTCGTCTCATTCAATAATAGATCAATAG 2769 0.4251 MWEWTLQDQEKELELESDEGEGEAEIEVPLPLTVTSRVLYMLGDITAGPAFRFTQWLQLVRKRTANYRSSGFPRRLSTTMPSTSSIKESIEEPKWGLHPDQTEISLWERLGNAAMLDIESSSFSWDMLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNCLGSAEASPLEAAAVIKISSSRMATQSERLGYEFAKWMGIQTPQARVIHNTSSEWQQIKEAAERARDAANFEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESRDSAERTAEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKLISANTYTLEAAFDSAINRYRPKVIRALQKERRSTSVDSRLNSHNPGLISQASDLSEIAESPRSTDTSLKSQTSGEALSSDLNIVAIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEYASNLLYDITGGKLGFPPPEDMDTTDVHASDITSIVHAFRTGFRAALRDLQGFHIFLLTLHQRLDTLLRSFLNIISKISSGESDKEDSLVPDSPSLAAGGSCYSPTSKERLANDNHQDFTDSESQRTASKASSSSNRDGCDSTPMSRESWHGKFYKGNGEPLRNLRLTAKLRDFHKFAKVDAESNKEMEQWNEMLKNDAIKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISEAASTERPSAVTSTLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSESQFPDLFEYKNFSVCDSEDYNISCIFEEACDFIDHVEQTGQKVLVHCFEGRSRSATLVLAYLMLRKKYTLLEAWQALKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQQRKPTMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHSIIDQ 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00116 922 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 764 816 IPR000387 GO:0016311|GO:0016791
Sebi190g00116 922 Pfam Dual specificity phosphatase, catalytic domain 711 836 IPR000340 GO:0008138|GO:0016311
Sebi190g00116 922 Gene3D - 272 401 IPR036940 -
Sebi190g00116 922 FunFam Dual specificity protein phosphatase PHS1 667 841 - -
Sebi190g00116 922 SUPERFAMILY Protein kinase-like (PK-like) 55 431 IPR011009 -
Sebi190g00116 922 MobiDBLite consensus disorder prediction 366 403 - -
Sebi190g00116 922 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 695 840 IPR029021 -
Sebi190g00116 922 ProSiteProfiles Dual specificity protein phosphatase domain profile. 695 840 IPR020422 GO:0006470|GO:0008138
Sebi190g00116 922 SMART dsp_5 695 837 IPR020422 GO:0006470|GO:0008138
Sebi190g00116 922 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 18 921 IPR035010 GO:0004721|GO:0009737|GO:0043622
Sebi190g00116 922 MobiDBLite consensus disorder prediction 570 589 - -
Sebi190g00116 922 MobiDBLite consensus disorder prediction 362 403 - -
Sebi190g00116 922 Pfam Actin-fragmin kinase, catalytic 103 416 IPR015275 -
Sebi190g00116 922 CDD DSP 696 833 - -
Sebi190g00116 922 ProSitePatterns Tyrosine specific protein phosphatases active site. 782 792 IPR016130 GO:0016311|GO:0016791
Sebi190g00116 922 Gene3D Protein tyrosine phosphatase superfamily 678 850 IPR029021 -
Sebi190g00116 922 MobiDBLite consensus disorder prediction 528 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00116 Sebi-Chr190 1497501 1502264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00116 7 906 Protein tyrosine phosphatase (PTP) family AT5G23720 65.639 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00116 K14165 - gmx:100791993 1515.36