Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00113 ATGGCAGCTTTTTCATACCAACACCATCCCTTTCTTGTTGACTCTGCATGCTTCCCCAATACTCCCATTGACATGTCTTCTTTTGTGGAGCAACCCCATATAAACACTTCCCTTCCTCCTCACCACATTCATCAGGACAAGACATTTAGTGCCACAAATCAGGAAATTAGCTGTGTTGATCAAAGCTCCAAGATCACCATCAGTGACACAGAGCTCTCTGTGGTAAAAAACCAGAGTCCTGAGACTTCCATGGTAGTGGACAAGCTTGAAAACGGTGAACAGGACTCAACAGAAGGGGGAAAGAAGAAGCAAAAGAAGAGCAATGGTGGGGTGAAAGGAGAGGAAAAGCCAAAAGAAGAGAAGAAAGAACAGAAAAAAGGTTCTGAAGAGCCTCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACTTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACGGGAAAGGCCCTTGTGTTAGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTTTTGTCTATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTTGCAATGGACCTAGACACCCTCTTGGTTAGACCAGATCAGAAACTAAATAGCATAGCATCACCATCACCACTACCATGTGTGTCACTATGCAACCCCAACCAGGCTACAGCTTTTGCTGATACAACCACTCTGACCTCCACTTTCCCAGCTGCTAATAATGATTATCTTTTAGATTATTCATCTTCAGTTTTTCTTCAAGGACAGGGGTCAAATAATCTCTCCATGGAGCATTTGAAGGAAGGGGAATTAATTGGTTGGTTCCTAGACCACTGGATAAAAGAAAAGAGACCTTTCAACATGATGAATAAAGTGCAGCAAAATTAA 969 0.4293 MAAFSYQHHPFLVDSACFPNTPIDMSSFVEQPHINTSLPPHHIHQDKTFSATNQEISCVDQSSKITISDTELSVVKNQSPETSMVVDKLENGEQDSTEGGKKKQKKSNGGVKGEEKPKEEKKEQKKGSEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDFAMDLDTLLVRPDQKLNSIASPSPLPCVSLCNPNQATAFADTTTLTSTFPAANNDYLLDYSSSVFLQGQGSNNLSMEHLKEGELIGWFLDHWIKEKRPFNMMNKVQQN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00113 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 210 IPR036638 GO:0046983
Sebi190g00113 322 MobiDBLite consensus disorder prediction 76 152 - -
Sebi190g00113 322 FunFam Basic helix-loop-helix transcription factor 141 213 - -
Sebi190g00113 322 Gene3D - 141 212 IPR036638 GO:0046983
Sebi190g00113 322 CDD bHLH_AtBPE_like 134 219 - -
Sebi190g00113 322 MobiDBLite consensus disorder prediction 91 152 - -
Sebi190g00113 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 194 IPR011598 GO:0046983
Sebi190g00113 322 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 241 IPR024097 GO:0006355
Sebi190g00113 322 SMART finulus 150 200 IPR011598 GO:0046983
Sebi190g00113 322 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00113 Sebi-Chr190 1411020 1413355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00113 1 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 51.502 4.29e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi190g00113 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00113 - - gmx:100790417 344.354