Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00108 ATGGGTTGCACGCTCGGAACGCCGGCGGGTGTCGGAGCTCGCCACCGTCGCCGGCGTAACACTGCTACTACTGACGGAGGTAATAATGCCGTTAGGGTTCCTGAGAGGCAGAGGACTCCCCATGCCGGTGAAATTCCGGCACCGGAGCGCCGGAAACCTCGATTCGCGGCGACCCAGCAGGGTTGGCCGCCGTGGTTGATGGACGTGGCCGGCGATGCAATCCGAGACTGGACTCCTCGCCGTGCCAACACTTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCTAGAGACCTTGTTACTGGGAAGATAGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGGCAGAGAGTGTGAAGTTTATGGCCAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTCTAAAGCTTGAGGGATTGGTTACTTCAAGAATATCATCGAGTCTTTACTTGGTTTTTGAGTACATGGAACACGATCTTGCTGGCCTTGCAGCTGGCCTTGGTGTCAAATTCTCTGAGCCTCAGGTTAAATGCTATATGAAGCAATTACTGTCTGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATCAAGGGCTCCAATCTGCTTGTTGACAATGAAGGGATACTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATTCTAAGCAAAAGCATCCCATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTTCTTCTTGGGGCTACATTCTATGGTGTTGGCGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATTATGCCTGGACGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAAAAATATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAACTGTATAAAAGATGCATCCTAGAAACGTTCAAGGATTTCCCATCTTCTTCATTGCCTCTAATTGAAACTCTTCTTGCTATAGATCCTGATGACCGTGGCACTACCTCAGCTGCTCTGAATAATGAATTCTTTATCACTGAGCCCTGTGCTTGTGAACCGTCAAATTTACCAAAGTATCCTCCCACCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTTAGTGGAAAAACTAATGCAGCTGATGGTGCCAGAAGAGTTAGAATACGTGAGCGTGGATGTGCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATCGGTGGAGAGTTGTGACACATGCAAATGCAAAAAGTAGAAGTGAGAAATTTCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTGGATGCATCACACAAAGGAACTGTTTCATTTGGAGCCACTGAAACTTCCTTTAGCTCAACCACTTCTAATTCAAAACCTTCTGGATCTGTTGGAAGTCATGCTTCAGCCAGCTCTTACAAAGGAAGGAAAACCAATAAAGCAGATTCCCAAACAGTATCCTCATGGAAATTTTTAAGTTCATTCAAGCCATCAACCGTTGGCCTTTCATTCAATTTATTATTTAGAAGCAAATAA 1647 0.4548 MGCTLGTPAGVGARHRRRRNTATTDGGNNAVRVPERQRTPHAGEIPAPERRKPRFAATQQGWPPWLMDVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVLKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGLGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLVDNEGILKIADFGLATFYDSKQKHPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQLYKRCILETFKDFPSSSLPLIETLLAIDPDDRGTTSAALNNEFFITEPCACEPSNLPKYPPTKELDVKLRDEEARRQKALSGKTNAADGARRVRIRERGCAIPAPEANAEIQTNLDRWRVVTHANAKSRSEKFPPPHQDGAVGYPLDASHKGTVSFGATETSFSSTTSNSKPSGSVGSHASASSYKGRKTNKADSQTVSSWKFLSSFKPSTVGLSFNLLFRSK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00108 548 Gene3D Transferase(Phosphotransferase) domain 1 168 409 - -
Sebi190g00108 548 Pfam Protein kinase domain 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi190g00108 548 FunFam probable serine/threonine-protein kinase At1g54610 72 167 - -
Sebi190g00108 548 PANTHER CELL DIVISION PROTEIN KINASE 83 375 - -
Sebi190g00108 548 MobiDBLite consensus disorder prediction 451 471 - -
Sebi190g00108 548 SUPERFAMILY Protein kinase-like (PK-like) 78 373 IPR011009 -
Sebi190g00108 548 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi190g00108 548 MobiDBLite consensus disorder prediction 37 51 - -
Sebi190g00108 548 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Sebi190g00108 548 Gene3D Phosphorylase Kinase; domain 1 71 167 - -
Sebi190g00108 548 MobiDBLite consensus disorder prediction 484 519 - -
Sebi190g00108 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Sebi190g00108 548 FunFam probable serine/threonine-protein kinase At1g54610 168 409 - -
Sebi190g00108 548 SMART serkin_6 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi190g00108 548 MobiDBLite consensus disorder prediction 1 55 - -
Sebi190g00108 548 CDD STKc_CDK9_like 85 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00108 Sebi-Chr190 1359389 1362944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00108 77 403 Core Cell Cycle Gene Families AT5G10270 50.000 7.85e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sebi190g00108 Pkinase 4.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00108 K08819 - gmx:100789359 902.508