Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00106 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAGACTGCCTCCTGGATTTCGTTTCCAGCCAACAGATGAAGAACTTGTCTTTCAGTACTTGAAATGTAAAGTCTTCTCATGCCCCTTGCCAGCTTCCATCATTCCTGAGATCAATGTCTCTAAGTACGATCCTTGGGATTTGCCAGGAAATTGTGATGAGCAAGAGAGGTACTTTTTCAGCTCAAAGGAAGCTAAATATCGAAATGGTAATCGCATGAACCGAACAACCAAATGTGGGTATTGGAAGGCAACAGGGTCAGACAAAAGAATATCATCTCCAATGTGTAATGGCATTGTGGGGATAAGAAAAACACTGGTTTTTTATGAAGGGAAATCTCCAAATGGCTCAAAAACTGATTGGGTTTTGCATGAATATCGCCTTGTTAGTGTAGAAACTAGTGCTTGCAACTCAACCCAAAGCTATGTAAATGAGATAGGAGATTGGGTTCTGTGTCGCATAATGATGAAGAAAAGAAGTATAGAAAGTGATGGTAGCACCACTCATCATCATCATCACATGCATAGAAGGGCTCCTCCAAGATTGTTTGATTTCATGATGGTGAGCAAGACATGTTCTTCTACATCCTCTTCATGTTCAAGTTCAAGTAACATGATAGAGGTCTCTTCAAATGCACAAGACCATGAAGAAACAAGTACTGGATATGCTGATTTTTAA 711 0.3966 MEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKVFSCPLPASIIPEINVSKYDPWDLPGNCDEQERYFFSSKEAKYRNGNRMNRTTKCGYWKATGSDKRISSPMCNGIVGIRKTLVFYEGKSPNGSKTDWVLHEYRLVSVETSACNSTQSYVNEIGDWVLCRIMMKKRSIESDGSTTHHHHHMHRRAPPRLFDFMMVSKTCSSTSSSCSSSSNMIEVSSNAQDHEETSTGYADF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00106 236 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Sebi190g00106 236 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Sebi190g00106 236 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Sebi190g00106 236 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Sebi190g00106 236 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00106 Sebi-Chr190 1350066 1351206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00106 1 171 NAC Transcription Factor Family AT5G13180 64.327 1.15e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi190g00106 NAM 8.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00106 - - gmx:100812015 374.785