Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00086 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTAACTGAAGTGGATCAGGCAACGTTACCCAACATAGAAACAATGGATGGTTTAAGCAGATTTGGAGCTTATAGAACCAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTAGCACAGAATCAGTGCTGACCAAGTCCAACAAAGATGCTGGTGGAGTCTCCAAAATGACATCTTCAGGGTCATCTAAGAGAGCTCGAGCCATAAACAACGGGACACAGAGAGTGTCATGCCTTGTGGATGGGTGCCAATCAGATCTTAGTACCTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAATCCATTCCAAGACAGCGCAGGTCACAATTGGTGGCCACAAGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTCACGCGTTCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCCTTCTCAAGTTCACATGTGTACCCTACCACTGCTATGGTGAATCCTGCTTGGGGTGGAGGAGTTGTTACTTCCTGTGCAGATGTGAGGCTTCATAGCCACAACCAACACCAACAAATGCATTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCTCCAACAAGCTATAAAGAAGGGAAGCAATTGGCATTCATACAAGGTGACCAGCCCATGCCCACTCTCAGCAACCAAAGCCCACATCTTCCAGCTGCTGCTTCCATGAGGCCCAGCCCATTTTCAGAAAGCAACGGGCTGAGATGCAAATTATTCTGTGATAGCCTAACAAGTTCAGTCCATGACTCTTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCACAATCCTGGAAATGGATTAAACCAGATGGTGAATCCTCACACATCTTTTATGCAACCTTTAGGCCTGAGCCTGCATGATAACAGCTTGGGGTCAGTGAACCAAGTTTTGGGTCCTAACGAGAGTGACCATTGTGCCTCAATGTATAACATAGGTTCTAATAATGAATCCCCAGGGAATGAAGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1161 0.4643 MDWNLKAPSWDLTEVDQATLPNIETMDGLSRFGAYRTKGEFSVDLKLGQVGNSSTESVLTKSNKDAGGVSKMTSSGSSKRARAINNGTQRVSCLVDGCQSDLSTCRDYHRRHKVCEIHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPTTAMVNPAWGGGVVTSCADVRLHSHNQHQQMHLVDKQDLFLGSSPTSYKEGKQLAFIQGDQPMPTLSNQSPHLPAAASMRPSPFSESNGLRCKLFCDSLTSSVHDSSCALSLLSSPQTHNPGNGLNQMVNPHTSFMQPLGLSLHDNSLGSVNQVLGPNESDHCASMYNIGSNNESPGNEAPPLFPFQWE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00086 386 FunFam Squamosa promoter-binding-like protein 14 84 154 - -
Sebi190g00086 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 362 IPR044817 GO:0003677
Sebi190g00086 386 ProSiteProfiles Zinc finger SBP-type profile. 90 167 IPR004333 GO:0003677
Sebi190g00086 386 MobiDBLite consensus disorder prediction 56 82 - -
Sebi190g00086 386 Gene3D - 84 154 IPR036893 GO:0003677|GO:0005634
Sebi190g00086 386 SUPERFAMILY SBT domain 91 172 IPR036893 GO:0003677|GO:0005634
Sebi190g00086 386 Pfam SBP domain 93 166 IPR004333 GO:0003677
Sebi190g00086 386 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00086 Sebi-Chr190 1060626 1062997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00086 1 386 SBP-box Gene Family AT5G50670 43.325 4.02e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi190g00086 SBP 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00086 - - gmx:100806507 599.742