Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00067 ATGAAAGAAGGCGCCCAAGATCTCTGGAACAACCACGATGGTCCCCTAACCCAAGCCCAAGCCCAAGCCCAACCGCAGGTGAATTTACGCAAACTCATACCGAATCGGAATTTGACGAATTATACACAGACTAGGGATTACCGTTCTGTTCCTGAGGTTAGAAATAAGGACGATGGACATCGTCGTGTCAGCACCAACAAGGGCAGAATTTGGAGAAACCGTAGGTATGGGTCTTCCACTGAGAGTGACTGTGAGAGTGAGAATGAAATGGAATCTCAGGGTCACTATTCTAAGATCGGTAGTATTGCTTCTTTGGGGAAATATGATGTGAAGAGGGAAAGGAGGGTGATGCCCAAGTCCTATGATGAGGAAACTGATTTCTCGGAGCAGGTTGAATTGATCAAGTATCAGATTCATAAGAGGAAGTTAAGCCAAAATGAGGAACAAGAACAACAAAACATCCTGAGTCAAACAAGATTTGATGAGTGCGGTATATCACCATTGACAGTCAAGGCACTTTCTTCAGCTGGTTACATTCATTTGACCCGGGTGCAAGAGGCTAGCCTCCCTATTTGCCTAGAGGGTATGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGTTATGAGTAGCAATACCTCTCAACGTGTGCCTCCAATACTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTCTACTGAGATGTCATGATGGAATTGGGGTGCAGACACTAGTAGGAGGTGTACGATTTAAAGTCGATCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTGGCTACACCTGGTAGGTTGCTGGATCACATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGGTTTCGAAAGGATATAGAAAATATCATTGATTGTTTGCCCCGTCAAAGGCAGTCCTTGCTGTTTTCTGCAACCATCCCAAAGGAGGTCCGTCGAATATCTCAGCTTGCTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAGTGGGTTGTGTGGAAACTCCTGTTCAGGTAAAGCAATCTTATCTTATTGCTCCACATGAATCTCATTTTCAAGTAGTACATCATATTTTGAAGGAACATGTCTTGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATTACTGGGATGGTAACATCACTCATGTATCACCTTCTTCGGGAAATGAAAATGAATGTCAGGGAGATACATTCTCGAAAACCTCAGCTCTATAGAACTCGCATATCAGATGAGTTCAGGGAATCCAAACAAATGATTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCATCAGACCGTGAACAATATATACATCGTCTAGGAAGAACAGGACGGGAAGGTAAAGAAGGGGAAGGCATATTATTGGTTGCTCCATGGGAAGAGTATTTTTTAAATGAAATCAAGGATCTCCCTCTAAAGAAATCCCCCTTACCAGAAATAGATCCACAGATAAAGCTTAAGATTGAGCATTCAATGGCGAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGATCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCACTTAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 1884 0.4199 MKEGAQDLWNNHDGPLTQAQAQAQPQVNLRKLIPNRNLTNYTQTRDYRSVPEVRNKDDGHRRVSTNKGRIWRNRRYGSSTESDCESENEMESQGHYSKIGSIASLGKYDVKRERRVMPKSYDEETDFSEQVELIKYQIHKRKLSQNEEQEQQNILSQTRFDECGISPLTVKALSSAGYIHLTRVQEASLPICLEGMDALVKAKTGTGKSAAFLLPAIETVLKVMSSNTSQRVPPILVLILCPTRELASQIAAEAKVLLRCHDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIENIIDCLPRQRQSLLFSATIPKEVRRISQLALKREHKYVDTVGVGCVETPVQVKQSYLIAPHESHFQVVHHILKEHVLQTPDYKVIVFCITGMVTSLMYHLLREMKMNVREIHSRKPQLYRTRISDEFRESKQMILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLVAPWEEYFLNEIKDLPLKKSPLPEIDPQIKLKIEHSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIADLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00067 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 552 IPR001650 -
Sebi190g00067 627 SMART ultradead3 177 388 IPR014001 -
Sebi190g00067 627 CDD SF2_C_DEAD 387 520 - -
Sebi190g00067 627 Pfam Helicase conserved C-terminal domain 405 510 IPR001650 -
Sebi190g00067 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 529 IPR027417 -
Sebi190g00067 627 Gene3D - 135 374 IPR027417 -
Sebi190g00067 627 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Sebi190g00067 627 Pfam DEAD/DEAH box helicase 182 360 IPR011545 GO:0003676|GO:0005524
Sebi190g00067 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 372 IPR014001 -
Sebi190g00067 627 Gene3D - 382 606 IPR027417 -
Sebi190g00067 627 PANTHER RNA HELICASE 123 556 - -
Sebi190g00067 627 SMART helicmild6 430 511 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00067 Sebi-Chr190 895075 898479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00067 158 541 Eukaryotic Initiation Factors Gene Family AT3G19760 27.919 2.34e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00067 - - lja:Lj4g3v2917670.1 1006.9