Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00048 ATGGGTTGTGAATTCTCCAAGTACTCAGCATGCTGCTGGGGTACAGAGCAAGGTGGTCCGGATCCTGAGGCTCACATTGATGAAAATGTAGACAACATTGAGGGCAATGACTTGCCACCCTTTCGTGAGTACACAGTTGATCAACTTAGGAAAGCTACATCTGGATTTGCTATGGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAATCAAATGCGAATTGCTGTCAAACGGTTCAACAAATCAGCCTGGCCAGATTCCCATCAATTTTTGGAAGAGGCCAAAGCCGTCGGTCAACTGAGGAACCAAAGATTGGCAAATCTGCTCGGATGTTGCAGTGAGGGTGATGAGAGGTTACTTGTATCAGAATATATGTCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAGCTCAGCCCATGAAATGGGCAATGCGATTGAGAGTTGCTCTACACCTTGCCCAAGCTCTGGAGTACTGTACCAACAAAGGACGTGCACTGTATCATGACCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACTCCACCTGAGTATCTGAGGACAGGTAGAGTTACTCCAGAGAGTGTGACTTACAGCTTTGGGACCCTTTTGCTTGACCTTCTTAGTGGAAAGCATATTCCTCCAAGCCGTGCCCTGGACCTGATTAGGGACAGGAACATTGAGATGCTATCAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAACTAGTTCGCTTAGCCTCACGATGCTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAGGTCATTGGTCACTGCTCTTATACCTCTACAGAAGGATTCCGAGGTTCCTTCTCATGTGCTGATGGGTATACCAGATGGTACTGCTGCTTTTCCCCTTTCTCCACTCGGGGAAGCTTGTCTACGGATGGATCTGACTGCCATACATGAGGTGCTGGAGAAAATTGGATATAAAGATGATGAGGGCGCAGCAACTGAGCTTTCTTTCCAAATGTGGACCAACCAGATGCAGGAAACCATAAACTCAAAGAAGAAGGGGGATGCTGCTTTTCGGCAGAAGGACTTCAGAACTGCCATTGATAGCTATACACAGTTCATTGAGGTTGGAACCATGGTTTCTCCAACAGTTTATGCGCGTCGAAGTCTGTCTTATCTCATTAACAATATGCCAAATGAAGCACTCAATGATGCATTGCAGGCACAAGTAATATCTCCAGTTTGGTACATGGCATTTTATTTACAGGTTGTGGCTCTTCTTGTGCTGGGCAAGGAGAATGACGCCCAAGTGGCACTTAAGGAGGGTTCTTCACTTGAAACTAAAAAAGGCACAAATTAG 1464 0.4454 MGCEFSKYSACCWGTEQGGPDPEAHIDENVDNIEGNDLPPFREYTVDQLRKATSGFAMENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNKSAWPDSHQFLEEAKAVGQLRNQRLANLLGCCSEGDERLLVSEYMSNDTLAKHLFHWEAQPMKWAMRLRVALHLAQALEYCTNKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSRALDLIRDRNIEMLSDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEVPSHVLMGIPDGTAAFPLSPLGEACLRMDLTAIHEVLEKIGYKDDEGAATELSFQMWTNQMQETINSKKKGDAAFRQKDFRTAIDSYTQFIEVGTMVSPTVYARRSLSYLINNMPNEALNDALQAQVISPVWYMAFYLQVVALLVLGKENDAQVALKEGSSLETKKGTN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00048 487 SUPERFAMILY TPR-like 384 483 IPR011990 GO:0005515
Sebi190g00048 487 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Sebi190g00048 487 Gene3D Tetratricopeptide repeat domain 380 486 IPR011990 GO:0005515
Sebi190g00048 487 FunFam probable serine/threonine-protein kinase At4g35230 380 487 - -
Sebi190g00048 487 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Sebi190g00048 487 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Sebi190g00048 487 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Sebi190g00048 487 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 28 484 IPR045845 GO:0004672|GO:0009742
Sebi190g00048 487 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi190g00048 487 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Sebi190g00048 487 SUPERFAMILY Protein kinase-like (PK-like) 39 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00048 Sebi-Chr190 679184 684711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00048 44 335 Glycoside Hydrolase AT3G07070 33.750 1.94e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi190g00048 PK_Tyr_Ser-Thr 5.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00048 K14500 - gmx:100819210 855.129