Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00040 ATGGTGCAAGACAACATGAAGAAACAACTTGCTTTGGCTTTGAGAAGCATCCAGTGGAGCTATGCAATTTTCTGGTCTGATTCAGCTAACCAACCAGGGGTATTGAGTTGGAGGGAAGGGTATTATAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGGGTAGAACTTAATTCTGATCAAATTGGGTTGCAAAGGAGTGAACAGCTGCGAGAGCTATTCAAGTCTCTCAAAACTGCAGAAATCAACCCACAAACAAAAAAGCCTTCAGCGACTCTATCCCCTGAAGATCTCACAGATACAGAGTGGTATTATTTGGTTTGTATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCGAATGGTCAACCCATTTGGCTGAACAATGCCTCTTCCATTGATTGCAAAATTTTTAGTCGCTCTCTTTTGGCAAAGCTGTTTACCATACTTACAGTGGCACAAAGTCTGAATTTGTCTTCTTTGTTTGGTTTTTGTTCCATGAACTCACTTGGGACAATTATCTTCTCTCATGCTCAGAGTGGATCCATTCAGACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTTATTGAGCTAGGTACAACTGAGCAGGTCTCAGAAGATCTCAGTCTCATTCAACGGATCAAAACTTCTTTCTTGAATAATCTGCATGCCAATGATCCTATTAAGTCTGGAGCTACATTGAAATCAAGGAATGAGGAAGGTGTTGATTGTGTAGCATTTGATCATAATGCTTATAATGTTGAATTAATTCCTGAAGTTGGATATGGTGTAATCAACACAACAACCTCGCCTAATGGTAGTTCAAATGCATTCCAAATCAATCAACCACCAGATGAAACATTCATGGTTGAAAGCATAAACCATGGCACCTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGCAATGGTGTCCACAACTCCATGAATTCTAGTGACTGTATATCACAAAGTTTTGTCAGTCCTGAGAAGATAGCTTCTGCTCCCAAGGGTGCTAACCATTTTGACCGTTGCACTCAAGACCTTGAAAAGTGCAATAACCCAACAATGACCTTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGCCCTTTTGAAAAGCTCAGACCAGTTAATGATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAACCTTTTCTAGTTGGAAGAAAGGAGTGTCAGTGTATTGCCAAAGGCCAAGAGCAGGAACCTCACAAAACTTATTGAAGAAGGTATTGTTTGAAGTTCCTAGGATGCATATGGATGGGCTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATGAAATTGGTATGAACCACGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAAAAAGCTTGAGAAAAGGGTAAGAGAGTTAGAAGCTAAGAGGGAACTAACAGATATAGAGAGTAGGAGTAAAAAATCATCTCATGATATGGGGGAGAGGACTTCAGATCATTATTTTAACAAAGCTAATAGTGGCAAGAAAACAGTGGTAAAAAAGAGGAAAGTCTGTGACATAGAGGAGGCAGGGAGAGAGATTAATTCAGATGCTTTAAGAGGCAGTTCTGCAAATGATGTTACTGTCAGTATAAGTGACAATGAAGTTATGATAGAAATGAGGTGCCCTTGCAGAACAGGAAGGTTGTTGGAAATTATAGAAGCAGTTAGCAGTCTCAATATAGATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGACCATTAAATCTAAGTTCACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGTTTCCAAGTGTTGA 2001 0.3923 MVQDNMKKQLALALRSIQWSYAIFWSDSANQPGVLSWREGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEINPQTKKPSATLSPEDLTDTEWYYLVCMSFVFNIGQGLPGRALANGQPIWLNNASSIDCKIFSRSLLAKLFTILTVAQSLNLSSLFGFCSMNSLGTIIFSHAQSGSIQTVVCFPFMEGVIELGTTEQVSEDLSLIQRIKTSFLNNLHANDPIKSGATLKSRNEEGVDCVAFDHNAYNVELIPEVGYGVINTTTSPNGSSNAFQINQPPDETFMVESINHGTSQVQNWQVIDDELSNGVHNSMNSSDCISQSFVSPEKIASAPKGANHFDRCTQDLEKCNNPTMTLVDPRSDDWHYQRVLSALLKSSDQLMMGMHFQNFHQESTFSSWKKGVSVYCQRPRAGTSQNLLKKVLFEVPRMHMDGLLESQEENDYKEGTRLEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLKKLEKRVRELEAKRELTDIESRSKKSSHDMGERTSDHYFNKANSGKKTVVKKRKVCDIEEAGREINSDALRGSSANDVTVSISDNEVMIEMRCPCRTGRLLEIIEAVSSLNIDIDFNSVQSTEADGNLYLTIKSKFTGPTNATAKRIKQTLQKVVSKC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00040 666 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 223 IPR025610 -
Sebi190g00040 666 SMART finulus 468 517 IPR011598 GO:0046983
Sebi190g00040 666 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Sebi190g00040 666 PANTHER TRANSCRIPTION FACTOR TT8 170 664 - -
Sebi190g00040 666 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 525 IPR036638 GO:0046983
Sebi190g00040 666 Pfam Helix-loop-helix DNA-binding domain 466 512 IPR011598 GO:0046983
Sebi190g00040 666 MobiDBLite consensus disorder prediction 526 548 - -
Sebi190g00040 666 Gene3D - 461 523 IPR036638 GO:0046983
Sebi190g00040 666 Coils Coil 501 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00040 Sebi-Chr190 573868 577234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00040 2 666 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.122 8.96e-172 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi190g00040 bHLH-MYC_N 1.7e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00040 - - gmx:100808167 948.347