Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00036 ATGGACAACAAGGAGGAAGATGTTAAGGTTGGAGCAAACAAATTCTCAGAAAGACAACCATTGGGGACAGCAGCTCAGGCTGGCATTGCTGAGTTCATGGCTACCTTCTTGTTCCTCTACATCACCATCTTGACTGTGATGGGTGTCAACAGGTCATCCAGCAAGTGTTCCTCTGTTGGCATTCAGGGTATTGCCTGGTCTTTTGGTGGTATGATCTTTGCCCTTGTGTACTGCACTGCTGGAATTTCAGGTGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCTAGGAAGCTCTCCCTTACAAGAGCTCTATTCTACATTATCATGCAATGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGGTTTGAGGGTAATGCTAGATATGAGTTGTTCAAAGGTGGAGCAAATTTTGTAAATCCTGGATACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTCGGTACCTTTGTTCTTGTCTACACCGTTTTTTCTGCCACTGATGCCAAGAGAAACGCTAGGGACTCCCATGTTCCTATTTTGGCTCCCCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCCACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCTATCATCTTCAACAGGGACTTAGCATGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCTCTTGCTGCTTTGTATCACCAGATAGTCATCCGAGCCATTCCTTTTAAGACAAGGGCTTGA 786 0.4733 MDNKEEDVKVGANKFSERQPLGTAAQAGIAEFMATFLFLYITILTVMGVNRSSSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYELFKGGANFVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDLAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00036 261 ProSitePatterns MIP family signature. 86 94 IPR022357 -
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 SUPERFAMILY Aquaporin-like 25 253 IPR023271 -
Sebi190g00036 261 NCBIfam MIP family channel protein 30 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 FunFam Probable aquaporin PIP1-2 20 261 - -
Sebi190g00036 261 Gene3D Glycerol uptake facilitator protein. 21 259 IPR023271 -
Sebi190g00036 261 CDD MIP 26 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi190g00036 261 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 26 256 IPR034294 -
Sebi190g00036 261 Pfam Major intrinsic protein 25 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00036 Sebi-Chr190 532466 533664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi190g00036 1 261 Major Intrinsic Protein MIP AT3G61430 77.352 7.82e-160 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00036 K09872 - gmx:121174914 485.723