Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi190g00028 ATGGAAGGATGGTCAACTTTCTCAAATGGGTATTCCTTAGATTGCCTTGGAGTTGAAACTGTTGGGGCATTTCATGGTAACGGTTGTTGCCTTGTAAAAGATCACGTAGATAGTGCTGACCATGACAAAGCTAAACAAAAATGTTTGTTTTATCAACTTTTTGCTGTTTACCTAAAGGAGGATTGTTCTAGAGGCATTGTTAGGCCTGTGCCGGTTTTGCTCGGTGATGGTCAATTGCTAGATTTGTACAAACTGTTCTCCCTTGTGAAGGAAAGAGGCGGGTATGCTGTGGTGTCGAGAAAAGGATTGTGGGGCTATGTGACAAAGGAATTGGATTTGAACCTTCAAGTTTTGGCTTCGGTGAAATTAGTTTATGATAAGTATCTGACTGATTTTGAAGGATGGCTCAGGGAAACTTTTGAAGGGAATAATTTCAAAAATGGGAATAACGGGTGTGATTGGGGTTCTAAGTCGTTGCCATTAGATCTAGCTGGGGAGTTTAGAGGCCTATTATGCTCAAATGTAAAGGACAAAGATGATGAACTTGTCCAGTTAGAACCAAATAAAATTATAAAGTACATTGATTTGGTTAACCACAAGAGTGATACTAATTTGTTGGACACCAAAAATCAAAATAACAAATGTGAGGATGCCCAACATCCTGATGGCGATGATGATGAAAAACTCAGTAATGGTACTGATGATGATCTTGCTACCTCGGTCGCGGAAATTGCTGAGAAGGAATTTAACTCTCGCAAACGCAAAAGGGAGGCATTATCAGGAATGCTAAACTGGATGAAACATATTGCAAAGCATCCTCTTGATCCTTTAACCCAGTCAATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGACAGGACTCTTTTGTTCAGATACTGAGGGCAAGAGAGGTTCTGTTGCTGAGACAGCATGTAGAACCAAACAGTGGATCATCTTCTTCGCAGAAGCTGAAGATGCATCCTGCCATGTATGAGGATCATGTTCCTGTTGGTCACCATGGAACAGTGAAATTGAGATGCAGTGAGAGGCTGCCTACCTCTGTTAAATCTCGTTTGTGCTCTTGCTGCAATTCCTGTTCAGACAATGGAAATAGATTGGAAAGTTCAGTCAATATGGAGACAGAAAAATGTCCTCAGGAGAACAAAACTGTAACACCGGATTCGGTGACCGAAAAGATAATAGCTGACCCATCCGAGGATGAATTACTCGAAAAGAAGCAAGTTTCTATAGGTCCTCTTTTCCAAGCCGAAGTTCCCCAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGCCTTTGAAACATGACTCAAAACATGCTACTGAAACAGATCTTATTGGGAGAGGAAAACAAGGAAAGTGTAGCTGCCAAGTTCAAGGTTCTGTTGAGTGTATCAGATTTCACATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGTATTTTACCATTGGGGATTTGATCGCATGGGTGAGGAAGTTTCACTTCAATGGACAGCTGAAGAAGAAAAGAAATTTAAGGATATTATGAAGTCAAATATACCCTCCCAAAATAGGTTTTTTTGGAACAATTCATCCAAATACTTCCCAAAGAAGACAAGAAAAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAGCTAAGAAGCTATCAGAATCGTGTTACTCCAAATAGTGTTGATAGTGATGATGATGAAGTAGAATTTGGATCTTTTGGTGATGGTTTTGGGATGGAAGCTATCAAGGATCCAGGTTTGAATGAATCGACCACCAACCCGATTCCCAGTGTGTTGTGGATGATGAGTGATTACAAGGTGGAGATGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCATGGACCTAAAGACAGTCCTTATCAGGAAGGTGTATGGAAGATAAGAGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCGTCCATTGGTTTTGTCAACAAAATTTACCATCCTAATGTTGATGAAATGTCTGGTTCAGTTTGCTTAGATGTTATTAATCAGACTTGGAGTCCCATGTTTGACCTTGTCAATGTGTTCGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATGCGAGATCATGCTGCATATGAACAAAAAGTCAAAGGTAGTAATCCTTATAAAGTTTCTATAGTATAA 2256 0.4003 MEGWSTFSNGYSLDCLGVETVGAFHGNGCCLVKDHVDSADHDKAKQKCLFYQLFAVYLKEDCSRGIVRPVPVLLGDGQLLDLYKLFSLVKERGGYAVVSRKGLWGYVTKELDLNLQVLASVKLVYDKYLTDFEGWLRETFEGNNFKNGNNGCDWGSKSLPLDLAGEFRGLLCSNVKDKDDELVQLEPNKIIKYIDLVNHKSDTNLLDTKNQNNKCEDAQHPDGDDDEKLSNGTDDDLATSVAEIAEKEFNSRKRKREALSGMLNWMKHIAKHPLDPLTQSIPKPSKWKEYKGQDSFVQILRAREVLLLRQHVEPNSGSSSSQKLKMHPAMYEDHVPVGHHGTVKLRCSERLPTSVKSRLCSCCNSCSDNGNRLESSVNMETEKCPQENKTVTPDSVTEKIIADPSEDELLEKKQVSIGPLFQAEVPQWTGVVSESDSKWLGTQVWPLKHDSKHATETDLIGRGKQGKCSCQVQGSVECIRFHIAENRMKLKLELGSVFYHWGFDRMGEEVSLQWTAEEEKKFKDIMKSNIPSQNRFFWNNSSKYFPKKTRKNLVSYYFNVFLIQLRSYQNRVTPNSVDSDDDEVEFGSFGDGFGMEAIKDPGLNESTTNPIPSVLWMMSDYKVEMINDGMQEFFVEFHGPKDSPYQEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMMRDHAAYEQKVKGSNPYKVSIV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi190g00028 751 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 599 - -
Sebi190g00028 751 SUPERFAMILY UBC-like 617 741 IPR016135 -
Sebi190g00028 751 CDD SANT 514 561 IPR001005 -
Sebi190g00028 751 Pfam ARID/BRIGHT DNA binding domain 53 133 IPR001606 GO:0003677
Sebi190g00028 751 ProSiteProfiles ARID domain profile. 44 137 IPR001606 GO:0003677
Sebi190g00028 751 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 597 749 IPR000608 -
Sebi190g00028 751 MobiDBLite consensus disorder prediction 213 227 - -
Sebi190g00028 751 FunFam Ubiquitin-conjugating enzyme 5, E2 607 748 - -
Sebi190g00028 751 CDD UBCc 617 741 IPR000608 -
Sebi190g00028 751 SMART bright_3 45 138 IPR001606 GO:0003677
Sebi190g00028 751 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 674 690 IPR023313 -
Sebi190g00028 751 SMART ubc_7 605 749 - -
Sebi190g00028 751 SUPERFAMILY ARID-like 43 138 IPR036431 GO:0003677
Sebi190g00028 751 Pfam Ubiquitin-conjugating enzyme 619 741 IPR000608 -
Sebi190g00028 751 Gene3D Ubiquitin Conjugating Enzyme 615 746 IPR016135 -
Sebi190g00028 751 CDD ARID 83 133 - -
Sebi190g00028 751 Gene3D - 33 145 IPR036431 GO:0003677
Sebi190g00028 751 MobiDBLite consensus disorder prediction 208 235 - -
Sebi190g00028 751 SMART ARID_2 41 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi190g00028 Sebi-Chr190 419571 435536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi190g00028 UQ_con 5.6e-36 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi190g00028 - - gmx:100819320 873.618