Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi18g00072 ATGAGTCTCAGGCTCGTCTTCTTCGGAGATTTCTGTTGCATCTGCTACTTCTTCTTCTTGCATCAAACTGATAAGGATTCCAGAACAAAACTGGAATGGAATCCATCACCAGAACCTTTCCACTCTGGAAGCTTCAGTTCTCTGGATGTTCACCGTGAAGAGGAGGACGCTCCCACCGGCGAGGACGAGGACACTGGAGTTCAAGTCGCTCTGATCATCAAACTTGAAGAGGTCTCTCTCTCCACTGGCAAAGAGGATGATGAACCTATTCTCGACCTCAAAACAAAGTTGCACCGTTTCGACAAGGACGGAAACCATTGGAAGGAGCGAGGAGTTGGCACCGTGAAGTTCCTGAACACAAATGCAGTTCGGGACTCTGTTTTGGATTTAAATAAGAGCAGTGATCCAGAAAACGACTCTGAAACGGAGATGGATACGGTGAATGACCCCGGAGCTAAGACGATTGAATCCATCGGGAAAGAGAAGGTGACTAGCGGAGACGACATCAACGCTGACAAGGCCTCAGGGAAGATCACGAAGCTTGGATCAGAAAGCATGGCTTATGTTATTGGTGGTGCAGACAGTGCACAGAATTGGTATGTTTACTCTGCTGCTGCAGAATTTGCTAGCTTGTTTGATTCTATTTACACTCCGGAGATGTCCATGATTGGTTTAGATAAAGAGAAGGCATCAATTGATTCAATTCTTGCTGGGATACGAGCTGTGATTGGTGGTTGTTTGGATACCCTTATTCTGATTCCTTATCCTTTTTGGCTCAATGAGCACATCCAACATGCACCACAGTTGTTTGATGAAATGTGTGACTCAGGTGGTACTGCCGGTGGTGTTCTAATTACTGCTTCCGATTGCTTTATGTCTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACCATGAAATCTGTTTGGCAATATGATCTAGTTAAAAACTCTAGGACTGAGGCTAGTCCAATGTCAGTTGTTTATGATCCAAGTATAAATTCATGGCTTGAAATACCAATTAGTGGTCCTCTGAAAAGACGATTGCAGCAACTCATGAACTCTCATCCTGTCATGCTTTTCATGAAAGGAAGTCTTGAAGAACCAAAATATGGATTTAACAGAAAAGTTGTTGATGTTTTGAAGAAAGAGAAGGTCAAGTTTGGAAGTTTTGATATTCTGTCAGATTTAGAGGTTCGTGATGGCTTGAAGAAGTTTTCTAACTGGCCCACATATCCTCAGCTCTACTGCAAAGGAGAACTTCTTGAACCGGAAAATGCCAAGGGTGGCATCTCTAAATCTACTAATTTGAGTATAACCTTAAGCTCTCGACTAGAAAGCCTGATAAATTCAAGCCCAGTTATGCTGTTTATGAAGGGAAAACCAGATGAACCAATGACTGGAAGTTGGCCAGCAAGGCAAGCTGGAACAAAATTGAGTGTTACTGTCAATGATGATCTATATGCATTTGATCCTTCAAATTCTCTTGACAGTGCAAAAATCAAGGTATATGATTATGAAGGTGATACATGGAAAGTAGTTGCAAGAGATGTTCCTATTCAGTTGGACAGAAACAAGGGGTACATATACCCTCTGCATATCAGAATGAAGGGGTACACATACCTTGTTGGATGA 1662 0.4254 MSLRLVFFGDFCCICYFFFLHQTDKDSRTKLEWNPSPEPFHSGSFSSLDVHREEEDAPTGEDEDTGVQVALIIKLEEVSLSTGKEDDEPILDLKTKLHRFDKDGNHWKERGVGTVKFLNTNAVRDSVLDLNKSSDPENDSETEMDTVNDPGAKTIESIGKEKVTSGDDINADKASGKITKLGSESMAYVIGGADSAQNWYVYSAAAEFASLFDSIYTPEMSMIGLDKEKASIDSILAGIRAVIGGCLDTLILIPYPFWLNEHIQHAPQLFDEMCDSGGTAGGVLITASDCFMSLFLENYGVRKLEAAFAVLIATMKSVWQYDLVKNSRTEASPMSVVYDPSINSWLEIPISGPLKRRLQQLMNSHPVMLFMKGSLEEPKYGFNRKVVDVLKKEKVKFGSFDILSDLEVRDGLKKFSNWPTYPQLYCKGELLEPENAKGGISKSTNLSITLSSRLESLINSSPVMLFMKGKPDEPMTGSWPARQAGTKLSVTVNDDLYAFDPSNSLDSAKIKVYDYEGDTWKVVARDVPIQLDRNKGYIYPLHIRMKGYTYLVG 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi18g00072 553 SUPERFAMILY Kelch motif 314 530 IPR015915 GO:0005515
Sebi18g00072 553 SUPERFAMILY PH domain-like 72 119 - -
Sebi18g00072 553 Pfam Glutaredoxin 367 430 IPR002109 -
Sebi18g00072 553 ProSiteProfiles Ran binding domain type 1 profile. 68 118 IPR000156 GO:0046907
Sebi18g00072 553 Gene3D - 19 128 IPR011993 -
Sebi18g00072 553 Gene3D - 141 183 IPR042487 -
Sebi18g00072 553 MobiDBLite consensus disorder prediction 130 157 - -
Sebi18g00072 553 SMART ranbd_3 69 163 IPR000156 GO:0046907
Sebi18g00072 553 MobiDBLite consensus disorder prediction 32 64 - -
Sebi18g00072 553 SUPERFAMILY Thioredoxin-like 355 431 IPR036249 -
Sebi18g00072 553 CDD GRX_PICOT_like 358 430 IPR033658 -
Sebi18g00072 553 PANTHER GLUTAREDOXIN FAMILY MEMBER 444 477 IPR004480 -
Sebi18g00072 553 PRINTS Natural resistance-associated macrophage protein signature 301 322 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi18g00072 553 PRINTS Natural resistance-associated macrophage protein signature 276 295 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi18g00072 553 SUPERFAMILY S-adenosylmethionine decarboxylase 178 232 IPR016067 GO:0004014|GO:0008295
Sebi18g00072 553 Pfam RanBP1 domain 80 121 IPR000156 GO:0046907
Sebi18g00072 553 ProSiteProfiles Glutaredoxin domain profile. 355 465 - -
Sebi18g00072 553 Gene3D Glutaredoxin 357 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi18g00072 Sebi-Chr18 3284067 3286853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi18g00072 281 330 Inorganic Solute Cotransporters AT1G47240 65.385 1.44e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi18g00072 - - lja:Lj4g3v0451080.1 198.749