Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi18g00008 ATGGCCATAACACCTTTAGGTAGCACGTCTGCTGCACAATGGGGAATTCGTCCTCAGCTATTACTGAGGTCCAGTATGACAGGCAAGATTGCATCATCCAGCCACAATGTTACAAGCAGGGTAGGCTTTATGGTTGCCCCAAGTTCAAGCTTTTTGTCTCGGGATTCTTTGCATACACTATTTAACACCAGTTTGTCTCAAACTTTGCATCACCGCAAGGGGTCAAGGTTGATTGTTAGAGCAGATTCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGCAATTACCATCCTGATGTGAACAAAGAACCTGGAGCAGAAACAAAATTTAAGGAGATCAGCAATGCATATGAGGATTTCAGCAATCCTTTTGATCTGTTTGAGTCCTTGTTTGAGGGGATGAATCGTGGTTCTCCTAGAGGTTCTTGGAATGGAGCAATTGATGGCGAAGATGAATATTACAGTCTTCTTTTGAACTTCAAAGAAGCAGTTTTTGGTGTAGAAAAAGAGATAGAGATTAGCCGATTAGAGATCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCAAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACGTGCTCTTCATGCAATGGGACTGGGGAAATTTCAACACCTTGCAGTACATGTTCTGGGGATGGTCGAGTGAGGAAATCGAAGCGGATTAGTCTTAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGATTAAGGGTCCGAAATGAAGGGAATGCTGGAAGGCGAGGGGGTGCTCCCGGAGATCTCTTTGTTGTTATTGAGGTTATCCCAGATCCTGTCCTTAGAAGAGATGACACTAACATTTTATACACCTGCAAGGTTTCTTACATTGATGCAATCTTGGGGACTACAATTAAGGTTCCTACAGTAGATGGAATGGTGGATTTGAAAATTCCAGCAGGGACCCAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCACTGCTGAATAAAAACAATATGAGAGGAGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTAAGCAGTGATGAGAAAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACTGGTCGGAGATGA 1236 0.4369 MAITPLGSTSAAQWGIRPQLLLRSSMTGKIASSSHNVTSRVGFMVAPSSSFLSRDSLHTLFNTSLSQTLHHRKGSRLIVRADSDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAETKFKEISNAYEDFSNPFDLFESLFEGMNRGSPRGSWNGAIDGEDEYYSLLLNFKEAVFGVEKEIEISRLEICGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCSTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLRRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKNNMRGDQLVRVQVEIPKRLSSDEKKLIEELADLSKGKTATGRR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi18g00008 411 Hamap Chaperone protein DnaJ [dnaJ]. 81 407 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Sebi18g00008 411 ProSiteProfiles dnaJ domain profile. 84 150 IPR001623 -
Sebi18g00008 411 Pfam DnaJ domain 84 138 IPR001623 -
Sebi18g00008 411 Gene3D DnaJ domain 63 139 IPR036869 -
Sebi18g00008 411 ProSiteProfiles Zinc finger CR-type profile. 181 262 IPR001305 GO:0031072|GO:0051082
Sebi18g00008 411 CDD DnaJ 84 137 IPR001623 -
Sebi18g00008 411 Gene3D - 164 299 - -
Sebi18g00008 411 Gene3D - 304 410 - -
Sebi18g00008 411 CDD DnaJ_zf 194 257 IPR001305 GO:0031072|GO:0051082
Sebi18g00008 411 FunFam Chaperone protein dnaJ 1, mitochondrial 304 411 - -
Sebi18g00008 411 Pfam DnaJ central domain 194 257 IPR001305 GO:0031072|GO:0051082
Sebi18g00008 411 Gene3D - 194 257 - -
Sebi18g00008 411 FunFam Putative Mitochondrial DnaJ chaperone 249 299 - -
Sebi18g00008 411 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 407 - -
Sebi18g00008 411 FunFam Molecular chaperone DnaJ 186 262 - -
Sebi18g00008 411 PRINTS DnaJ domain signature 120 140 IPR001623 -
Sebi18g00008 411 PRINTS DnaJ domain signature 86 104 IPR001623 -
Sebi18g00008 411 PRINTS DnaJ domain signature 104 119 IPR001623 -
Sebi18g00008 411 SUPERFAMILY Chaperone J-domain 44 138 IPR036869 -
Sebi18g00008 411 CDD DnaJ_C 165 387 - -
Sebi18g00008 411 SMART dnaj_3 83 140 IPR001623 -
Sebi18g00008 411 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 181 261 IPR036410 -
Sebi18g00008 411 Pfam DnaJ C terminal domain 169 384 IPR002939 -
Sebi18g00008 411 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 317 IPR008971 GO:0006457|GO:0051082
Sebi18g00008 411 SUPERFAMILY HSP40/DnaJ peptide-binding domain 309 395 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi18g00008 Sebi-Chr18 355438 359860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi18g00008 85 138 C2H2 Transcription Factor Family AT1G74250 41.667 3.76e-06 47.4