Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi189g00055 ATGGATTGGGTACGAGGAGATTCAATTGGTAGAGGAAGCTTCGCTATTGTCAATTTGGCTAAACCAACCACAAGCAATTCCACTTGGTTTTCTTCTCCGACCGTTGTTAAATCCTCTGAGGCTTCAACCTCGTTTTCGCTCAAGAACGAGAAACATGTCCTTGATTGCTTAGGTTCATGCCGGAGAATCATTCGGTGTTTCGGCGATGACTACACCTTCGAGAATGGTGAAGAGTATTACAATTTATTCCTTGAATACGCCGCCGGCGGGAGTCTCGCCGATCAGCTCAAGTTCCACGGTGGCCGGATTCCGGAGCAACGAGTTCGGAGTTACACGAGGTCTGTTATCGAGGGGCTTATGCATATTCACAAGAACGGGTTTGTTCACTGTGATGTGAAGCTTCAGAACATACTCGTGTTTGATGATGGAGAGATCAAAATCGCTGATTTTGGTCTTGCTAAGGAAACAGGGGTGAAACAGAGCAAGTTTGAATGCAGGGGAACTCCCCTGTTTATGTCGCCGGAATCGGTTAACGACGGCGAGTATGAGTCGCCGGCGGATATTTGGGCTCTTGGGTGTGCGGTGGTGGAGATGGTGACCGGAAAACCTGCGTGGAATGTGGAGAAAGGTTCGAGTATGTGGTCGTTGTTGCTTCGAATTGGAGCGGGAGAAGAATTACCAGAGATACCAGAGGAATTGTCGAAGGAAGGAAGGGATTTTCTTGAGAAGTGTTTCGTGAAGGATCCGAGAAAGAGATGGACGGCTGAGATGCTTTTGAATCACCCTTTTGTGGATGGTGATGACATTGTTTCATTGACGAATGTGAAGAATGAGTCACCAAGAAGCCACTTTGATTTCCCTGATTGGGTTTCCAGTGTGGCGAGTTCACCGGAAGAGCCTTGCCGGTGGGATTTTGGTTCGTCGTGTAGTTTCTGTTCGCCGGTGGACAGGCTCCGGCAGCTCGTGACAGTTCAGATGCCGGAGAGTTGGTCGGAATCTGATAGTTGGACTAGTATTAG 1019 0.4858 MDWVRGDSIGRGSFAIVNLAKPTTSNSTWFSSPTVVKSSEASTSFSLKNEKHVLDCLGSCRRIIRCFGDDYTFENGEEYYNLFLEYAAGGSLADQLKFHGGRIPEQRVRSYTRSVIEGLMHIHKNGFVHCDVKLQNILVFDDGEIKIADFGLAKETGVKQSKFECRGTPLFMSPESVNDGEYESPADIWALGCAVVEMVTGKPAWNVEKGSSMWSLLLRIGAGEELPEIPEELSKEGRDFLEKCFVKDPRKRWTAEMLLNHPFVDGDDIVSLTNVKNESPRSHFDFPDWVSSVASSPEEPCRWDFGSSCSFCSPVDRLRQLVTVQMPESWSESDSWTSI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi189g00055 339 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Sebi189g00055 339 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Sebi189g00055 339 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi189g00055 339 FunFam Mitogen-activated protein kinase kinase kinase 17 2 293 - -
Sebi189g00055 339 CDD STKc_MAPKKK 2 264 - -
Sebi189g00055 339 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 297 - -
Sebi189g00055 339 Gene3D Transferase(Phosphotransferase) domain 1 94 286 - -
Sebi189g00055 339 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Sebi189g00055 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Sebi189g00055 339 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi189g00055 339 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi189g00055 Sebi-Chr189 1575045 1576063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi189g00055 1 339 MAP Kinase Kinase Kinase AT5G67080 53.090 1.83e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi189g00055 Pkinase 4.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi189g00055 - - gmx:100798607 503.827