Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00101 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAAAACAAGATAAACCGTCAAGTCACATTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAAGCTTATGAACTCTCTGTCCTCTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTCTATGAGTTCTGCAGCACCAATAGGTACATATTCTTCTTTGTGCCCCGGCTTCTGTGTTCCCTTGTGTGA 231 0.4719 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNRYIFFFVPRLLCSLV 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00101 76 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Sebi188g00101 76 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Sebi188g00101 76 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Sebi188g00101 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi188g00101 76 FunFam Agamous-like MADS-box protein AGL13 13 70 - -
Sebi188g00101 76 Gene3D - 13 64 IPR036879 GO:0003677|GO:0046983
Sebi188g00101 76 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00101 Sebi-Chr188 1545486 1545716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00101 1 60 MADS-box Gene Family AT2G03710 93.333 1.05e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi188g00101 SRF-TF 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00101 K09264 - oeu:111372629 123.25