Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00099 ATGGGAAGGGGTAGGGTACAGTTGAAGAGGATAGAGAATAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGTTGGGTTGCTTAAGAAGGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATAACTATGCAGAGAGACAGCTAACTGCAAATGATTCTGAGACACAGGGAAACTGGACAATTGAATACAGTAGGCTTAAGGCTAAGATAGACCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTGTCTTCAATGAGCCTCAAAGAACTTCAGTGTCTGGAGCAGCAGTTAGATACTTCTCTCAAGAGTATCCGTACACGCAGAAACCAAGTGATGTACGAGTCAATTTCTGAGCTTCAGAAAAAG 471 0.4331 MGRGRVQLKRIENKINRQVTFSKRRVGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYNYAERQLTANDSETQGNWTIEYSRLKAKIDLLQRNHRHYMGEDLSSMSLKELQCLEQQLDTSLKSIRTRRNQVMYESISELQKK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00099 157 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 FunFam Floral homeotic protein APETALA 1 13 68 - -
Sebi188g00099 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 145 - -
Sebi188g00099 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sebi188g00099 157 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Sebi188g00099 157 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Sebi188g00099 157 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 ProSiteProfiles K-box domain profile. 88 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi188g00099 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi188g00099 157 Pfam K-box region 84 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00099 Sebi-Chr188 1504279 1507006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00099 1 157 MADS-box Gene Family AT1G26310 75.472 1.71e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi188g00099 K-box 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00099 K09264 - gmx:100783045 291.582