Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00089 ATGAGGTGGGTGTCGTTCGAAATCTTTACTTGGCTGGCTACGCCCAATGATCATTTTGCTATGCAAGTTCTTCTTGTGCATGAAGAGGGTGGGCGAATTGAAGGCACAATTAAGAAGGAGCATATGAGGAAGTTTGTCAATCTTCTGGTGGCGGGGCAAGTATACAAGATAACTGACTTTGCCATCAACTCAAACTTTGGCAAGTTTAGAGCATCACGCCATGACTATAAGCTTTCCTTTAATGGTGGGACCAAGATTACTCCATTTCCAAATGTTTCGATGCCTTTTCATGGGTTGTCACTGTCCAAAAGTTCTGATATTGTAGAAACAAGGGATCATTCAAATTATCTTATTGGTAGATTTCATGGGGGTCCTTACGCGACTTCCGATGAGATGAGGCTGGTATCAAGGGATGGCAGGGATACTAGGCTACTATTGTTGGACTTGGTTGATGAGATGGGGAAGATAAGGTGCGCTATTTTTGGAGATTTCATTGACACTGTTGCTGAATTTCTAAATCTGCCTCGTTGTGGCCTACCAGTGGTCACAGTCCAGCTGGCCAAAGTGAATATATATAAGGGAGAAGTGGGGATCCAAAACGTTATGAATGCCTCAAAGATACTGTGGGATCCAGATATCCCAGAAGCCATTGAATTTAAGAATGGGTTAGCTGTACATGAGGTTGAAACTAGTGTTGATATGGGAATCATTGCTCAGCGAAGACCAATTGTTCCTATAAGGGATGATTTCTTGAAGCTTAATCGGAACAAGACAATTAAGGACCTGGTAGAATTTGAGGAGGATGGAAGCTTTATTCTGTTAGCATATGTCTCTGAAATTTGTGACGAGTCAAACTGGTGGTATATGGCATGCATGTGTTTGAAATCTGTCAAACATGATGGAGTAACTTATTATTGTCGTCATTGTAATACCCATATGTTTCATGCCACTCCAAGGTATAAGTTAAAACTACAAGTTTCTGACGGAGAGGATCATGCTAGGCTGGTGTTATTTGATGCTGAATGTTACACATTGTTCAATCGTGCTTGCAAGGATATGTTACTGGAATCCAAGAATAAATTTGCTCCTTTGTTCCCCACAATTGGATATGTTGAGAGCAGTATTTCTTTACTTGATGATAAGTCTGAACCAAACTCTGTCATTACCATTGCTGACAACATCCCAAACTCTGGTGGAGAACCTGCTGCTACAATAGATGAAGGACCTTCTTCCTCCAAACGTGGTGGAGATCAGTCTGTGGAAGCTCTGTTTGAAAGGACCAAGAGGGGCTGGCTTCTGCCAATTAAGATGGAGAAGATGGACTAG 1326 0.4186 MRWVSFEIFTWLATPNDHFAMQVLLVHEEGGRIEGTIKKEHMRKFVNLLVAGQVYKITDFAINSNFGKFRASRHDYKLSFNGGTKITPFPNVSMPFHGLSLSKSSDIVETRDHSNYLIGRFHGGPYATSDEMRLVSRDGRDTRLLLLDLVDEMGKIRCAIFGDFIDTVAEFLNLPRCGLPVVTVQLAKVNIYKGEVGIQNVMNASKILWDPDIPEAIEFKNGLAVHEVETSVDMGIIAQRRPIVPIRDDFLKLNRNKTIKDLVEFEEDGSFILLAYVSEICDESNWWYMACMCLKSVKHDGVTYYCRHCNTHMFHATPRYKLKLQVSDGEDHARLVLFDAECYTLFNRACKDMLLESKNKFAPLFPTIGYVESSISLLDDKSEPNSVITIADNIPNSGGEPAATIDEGPSSSKRGGDQSVEALFERTKRGWLLPIKMEKMD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00089 441 Gene3D - 95 231 IPR012340 -
Sebi188g00089 441 SUPERFAMILY Nucleic acid-binding proteins 135 224 IPR012340 -
Sebi188g00089 441 Pfam Replication factor-A C terminal domain 272 353 IPR013955 -
Sebi188g00089 441 Gene3D - 5 88 IPR012340 -
Sebi188g00089 441 Pfam Domain of unknown function DUF223 23 112 IPR003871 -
Sebi188g00089 441 CDD RPA1_DBD_C 257 368 IPR047192 -
Sebi188g00089 441 MobiDBLite consensus disorder prediction 392 418 - -
Sebi188g00089 441 SUPERFAMILY Nucleic acid-binding proteins 8 94 IPR012340 -
Sebi188g00089 441 CDD RPA1_DBD_A_like 11 86 - -
Sebi188g00089 441 Gene3D - 248 369 IPR012340 -
Sebi188g00089 441 SUPERFAMILY Nucleic acid-binding proteins 257 355 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00089 Sebi-Chr188 1428175 1431199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00089 23 353 Core DNA Replication Machinery Family AT5G08020 22.636 4.85e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00089 - - lja:Lj6g3v0884310.1 251.136