Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00067 ATGACCTCAAAAACTAGAAGCTCTATCGTTCATGTAGCTCTCATAGTAGCTTTTCTCACTTCCAATGTTGTTATATCTGATGACAATGTACCAATTCCTGCCGGCAAGTCCCAGTTGGATGCCTGGTTCAATAAAAATGTGGGGTCATTTTCCCAAAGAAAGAGCAGTTTGGATTCTGCATTAGTGGCTGCAGAGAATGGCGCTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGATTTTAAAACCATCACGGATGCCATTAACAACATACCTAATGGGAACACCAAACGTGTGATTGTGTACATTGGTGGTGCAAATTATAATGAGAAAATCAAAATCGAAAGAACAAAACCTTTTGTCACCTTATATGGGGAACCGCAAAACATGCCAAACTTAACATATGGAGGCACTGCACAACAATATGGTACAGTTGATAGTGCTTCATTGATCGTTGAATCAGATTACTTCGTGGCTGCTAATGTCATCATCTCGAATTCCGCTCAAAGACCTGATGGAAAAAGGGCAGGAGCTCAAGCAGTTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGCTATTTGGATTCCAGGACACAATATGTGATGATAGGAATAGACATTTTTTCAAAAATTGCTTAATTCAAGGCACCGTGGATTTCATTTTTGGAAGTGGGAAATCACTATATTTGAACACTGAATTGAGAGTACTTGGCGACAGTGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGATGAAGAGGATAGTGCCTACTCATTTGTGCATTGCGATATTACTGGAACCGGATCTGGCACTTTCTTGGGCAGAGCATGGTTTTCTCATTCCAAAGTGGTCTTTGCTTACACCACTATGAGCAATGTTGTGAATCCATCAGGGTGGAGTAACAACAATCACCCTGAATATGACAGAACTACATTTTTTGGAGAATACAAGAACAAGGGACCTGGTGCAAATTCCAAAAAGCGTGCCCCTTTCACAAAGCAACTAAGTGATGCAGACGTCAAGCCTTTCATAACTCTTGGAATGCTTGAAGGCTCCAAATGGCTACTTCCTCCTCCATCCCCTAAAGTCTAA 1110 0.4117 MTSKTRSSIVHVALIVAFLTSNVVISDDNVPIPAGKSQLDAWFNKNVGSFSQRKSSLDSALVAAENGAKVVKVMQDGSGDFKTITDAINNIPNGNTKRVIVYIGGANYNEKIKIERTKPFVTLYGEPQNMPNLTYGGTAQQYGTVDSASLIVESDYFVAANVIISNSAQRPDGKRAGAQAVALRISGDKATFYNCKLFGFQDTICDDRNRHFFKNCLIQGTVDFIFGSGKSLYLNTELRVLGDSGMTVIVAQARKSDEEDSAYSFVHCDITGTGSGTFLGRAWFSHSKVVFAYTTMSNVVNPSGWSNNNHPEYDRTTFFGEYKNKGPGANSKKRAPFTKQLSDADVKPFITLGMLEGSKWLLPPPSPKV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00067 369 SUPERFAMILY Pectin lyase-like 68 362 IPR011050 -
Sebi188g00067 369 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Sebi188g00067 369 Gene3D - 65 364 IPR012334 -
Sebi188g00067 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 361 - -
Sebi188g00067 369 FunFam Pectinesterase 66 363 - -
Sebi188g00067 369 Pfam Pectinesterase 71 349 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00067 Sebi-Chr188 1025848 1027530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00067 10 366 Carbohydrate Esterase AT1G69940 57.143 2.24e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00067 K01051 - gmx:100786427 600.897