Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00066 ATGGCCATAAAAACAAAAAGATCTACCATTCAGGTGGCTTTCATAATAGCTTTCCTCACAACAAATGTTGTTTTATCCGATGACAATGTACCAATTCCCGCTGACAAGGCCAGATTGAAAGGCTGGTTTAATAAAAATGTGGCACCTTTTTCTCAAAGAAAGAATAGCTTGGACCCCGCACTAGTAGCTGCAGAGAATGGCGCTAAGGTTGTGAAGGTAATGCGTGATGGTAGTGGGGATTTCAAGACCATCACTGATGCCATTAATAGCATACCTAATGGGAACACCAAGCGTGTGATTGTGTACATTGGTGGTGCAAATTATCATGAAAAAATCAAAATTGAAAGAACAAAACCTTTTGTCACCTTGTATGGGGAACCACATAACAAACCAAACTTGATATTTGGGGGCACTGCACAACAATATGGCACTGTTGACAGTGCTACATTAATTGTTGAATCAGATTACTTTGTGGCTGCTAACATCATCATCTCGAACTCTGCACCGAGACCTGATGGAAAAAGGCCAGGAGCCCAAGCAGCAGCATTGAGAATTTCTGGTGATAAAGCAACATTTTATAATTGCAAGCTAATTGGATTCCAAGATACTAACACAAAATTAAAAGTGCTTGGCGACAATGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGATAAAGAGGATAATGTCTACTCATTTGTGCATTGTGATATTACTGGAACCGGATCTGGGACTTTCTTGGGTAGAGCATGGTTTTCTCATTCCAAAGTGGTTTATGCTTACACTAATATGAGCAGCGTTGTGAATCCAACAGGGTGGAATAACAACAATCACCCTGAATATGACAGAACTACTTTTTTTGGAGAGTACAAGAATGAGGGACCTGGTGCAGATCCAAAAAAGCGTTCCTCTTTCACAAAGCAACTAAGTGATGCAGAGGTCAAACCTTTCATAACTCTTAAAATGATTGAAGGTTCTAAATGGCTACTTCCTCCTCCAACTCCCAAAATCTCGAGCATGGCTTCAAACCTAATCGTCTTTGATGAAGATGACATTCAAGATTGTAGGAACAGCGTCATTGGTAAGATATTATCAGAGAAACCCGTTCATATTAACAGCCTCTCGAATGCTCTCAAAAGCATCTGGAATTCTCCCAAGGGTTTCAAAGTGATTGATCTAGGGGAGAAGATATTCCAAATCTTCTTTGAAACTGAAAAAGAGGCGGACAGAGTAATATGGGGTTTACCAGTTCATTGTCGCACAAAACAGATGGGTCAGCGCATTGGTTCTTGTATGGGCACAACTTTAGAATCATTTGTGTTTGAAGTCCAAGGCAAAGATACCTATGTTATTGACTTTAATACTTCAAAGCCCCTACTACCAGGTATCAATGTCGGATCAAGAAAGGAAGGAGTATTCTGGGTCGATTTCCAATTTGAACAGTTACCACAATTTTGCTACAAGTGTGGAGTAATCGGTCATGATGAGGATAGTTGCACCGGAGAACAAAATGTTGGAGATGAAGATCATCCAAGAGGCCCCTGGATGCGAGCTTCACATGCTGGGAAGGCGGTGAGACCAGAAGCTACCCACCTTAAACCAAAAACCGCTCAAGAAGAAAAGAAAAGAGAATCCTTCCTCTTTTGA 1650 0.4097 MAIKTKRSTIQVAFIIAFLTTNVVLSDDNVPIPADKARLKGWFNKNVAPFSQRKNSLDPALVAAENGAKVVKVMRDGSGDFKTITDAINSIPNGNTKRVIVYIGGANYHEKIKIERTKPFVTLYGEPHNKPNLIFGGTAQQYGTVDSATLIVESDYFVAANIIISNSAPRPDGKRPGAQAAALRISGDKATFYNCKLIGFQDTNTKLKVLGDNGMTVIVAQARKSDKEDNVYSFVHCDITGTGSGTFLGRAWFSHSKVVYAYTNMSSVVNPTGWNNNNHPEYDRTTFFGEYKNEGPGADPKKRSSFTKQLSDAEVKPFITLKMIEGSKWLLPPPTPKISSMASNLIVFDEDDIQDCRNSVIGKILSEKPVHINSLSNALKSIWNSPKGFKVIDLGEKIFQIFFETEKEADRVIWGLPVHCRTKQMGQRIGSCMGTTLESFVFEVQGKDTYVIDFNTSKPLLPGINVGSRKEGVFWVDFQFEQLPQFCYKCGVIGHDEDSCTGEQNVGDEDHPRGPWMRASHAGKAVRPEATHLKPKTAQEEKKRESFLF 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00066 549 Pfam Domain of unknown function (DUF4283) 353 425 IPR025558 -
Sebi188g00066 549 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 203 - -
Sebi188g00066 549 MobiDBLite consensus disorder prediction 502 517 - -
Sebi188g00066 549 MobiDBLite consensus disorder prediction 502 549 - -
Sebi188g00066 549 MobiDBLite consensus disorder prediction 525 549 - -
Sebi188g00066 549 ProSiteProfiles Zinc finger CCHC-type profile. 487 500 IPR001878 GO:0003676|GO:0008270
Sebi188g00066 549 Gene3D - 23 204 IPR012334 -
Sebi188g00066 549 Gene3D - 205 340 IPR012334 -
Sebi188g00066 549 Pfam Pectinesterase 71 203 IPR000070 GO:0030599|GO:0042545
Sebi188g00066 549 Pfam Pectinesterase 215 326 IPR000070 GO:0030599|GO:0042545
Sebi188g00066 549 SUPERFAMILY Pectin lyase-like 68 335 IPR011050 -
Sebi188g00066 549 Pfam Zinc knuckle 458 500 IPR025836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00066 Sebi-Chr188 1012954 1017219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00066 9 334 Carbohydrate Esterase AT1G69940 50.980 1.81e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00066 K01051 - gmx:100786427 524.628